HL_6D8M_001

3D structure

PDB id

6D8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant A125U/G126U

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D8M_001 not in the Motif Atlas

Geometric match to HL_2R8S_001

Geometric discrepancy: 0.0708

The information below is about HL_2R8S_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

6D8M|1|A|G|149
6D8M|1|A|G|150
6D8M|1|A|A|151
6D8M|1|A|A|152
6D8M|1|A|A|153
6D8M|1|A|C|154

Current chains

Chain A

Group I self-splicing intron

Nearby chains

Chain B

Group I self-splicing intron