6D8M Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6D8M_001 | 1/A/149:154 | GNRA | geometric HL_2R8S_001 HL_34789.5 | |
| HL_6D8M_002 | 1/A/166:174 | No text annotation | geometric HL_2R8S_002 HL_80008.1 | |
| HL_6D8M_003 | 1/A/235:239 | No text annotation | geometric HL_1GID_008 NA | |
| HL_6D8M_004 | 1/B/149:154 | GNRA | geometric HL_5FJC_003 HL_34789.5 | |
| HL_6D8M_005 | 1/B/166:174 | No text annotation | geometric HL_2R8S_002 HL_80008.1 | |
| HL_6D8M_006 | 1/B/235:239 | No text annotation | geometric HL_6U8D_003 HL_32346.6 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6D8M_001 | 1/A/103:107, 1/A/214:217 | Tandem non-canonical cWW pairs | geometric IL_5J7L_033 NA | |
| IL_6D8M_002 | 1/A/110:111, 1/A/209:211 | Single bulged A | geometric IL_2VPL_002 IL_14190.3 | |
| IL_6D8M_003 | 1/A/112:116, 1/A/205:208 | UAA/GAN related | geometric IL_2R8S_002 IL_77691.7 | |
| IL_6D8M_019 | 1/A/121:126, 1/A/196:200 | No text annotation | ||
| IL_6D8M_005 | 1/A/129:131, 1/A/192:193 | Single bulged U | geometric IL_2A64_002 IL_97561.6 | |
| IL_6D8M_006 | 1/A/134:136, 1/A/182:189 | cWH basepair with bulged bases | geometric IL_2R8S_005 IL_74957.1 | |
| IL_6D8M_007 | 1/A/223:226, 1/A/249:250 | Major groove platform with intercalated tWH | geometric IL_5DCV_006 IL_94991.2 | |
| IL_6D8M_017 | 1/A/223:227, 1/A/247:250 | Receptor of 11-nt loop-receptor motif | geometric IL_1GID_014 NA | |
| IL_6D8M_008 | 1/A/226:227, 1/A/247:249 | Major groove intercalation | geometric IL_1U6B_010 IL_43434.1 | |
| IL_6D8M_009 | 1/B/103:107, 1/B/214:217 | Tandem non-canonical cWW pairs | geometric IL_5J7L_033 NA | |
| IL_6D8M_010 | 1/B/110:111, 1/B/209:211 | Single bulged A | geometric IL_4V88_409 NA | |
| IL_6D8M_011 | 1/B/112:116, 1/B/205:208 | UAA/GAN related | geometric IL_2R8S_002 IL_77691.7 | |
| IL_6D8M_012 | 1/B/121:126, 1/B/196:200 | No text annotation | ||
| IL_6D8M_013 | 1/B/129:131, 1/B/192:193 | Single bulged U | geometric IL_4WF9_088 IL_97561.6 | |
| IL_6D8M_014 | 1/B/134:136, 1/B/182:189 | cWH basepair with bulged bases | geometric IL_2R8S_005 IL_74957.1 | |
| IL_6D8M_015 | 1/B/223:226, 1/B/249:250 | Major groove platform with intercalated tWH | geometric IL_5DCV_006 IL_94991.2 | |
| IL_6D8M_018 | 1/B/223:227, 1/B/247:250 | Receptor of 11-nt loop-receptor motif | geometric IL_1GID_014 NA | |
| IL_6D8M_016 | 1/B/226:227, 1/B/247:249 | Major groove intercalation | geometric IL_1U6B_010 IL_43434.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6D8M_004 | Kink-turn related |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6D8M_001 | 1/A/138:141, 1/A/162:165, 1/A/175:180 | No text annotation | geometric J3_1GID_002 NA | |
| J3_6D8M_002 | 1/B/138:141, 1/B/162:165, 1/B/175:180 | No text annotation | geometric J3_1GID_002 NA |
Problematic loops
No problematic loops
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