HL_6D8O_002

3D structure

PDB id

6D8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant A230U

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUGCAAAG

Length

9 nucleotides

Bulged bases

6D8O|1|A|U|168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D8O_002 not in the Motif Atlas

Geometric match to HL_2R8S_002

Geometric discrepancy: 0.2932

The information below is about HL_2R8S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80008.1

Basepair signature

cWW-F-F-F-cSH-F

Number of instances in this motif group

1

Unit IDs

6D8O|1|A|C|166
6D8O|1|A|U|167
6D8O|1|A|U|168
6D8O|1|A|G|169
6D8O|1|A|C|170
6D8O|1|A|A|171
6D8O|1|A|A|172
6D8O|1|A|A|173
6D8O|1|A|G|174

Current chains

Chain A

Group I self-splicing intron

Nearby chains

Chain B

Group I self-splicing intron