HL_6D90_012

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUUUCGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D90_012 not in the Motif Atlas

Geometric match to HL_8VTW_025

Geometric discrepancy: 0.3632

The information below is about HL_8VTW_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_29735.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6D90|1|2|U|538
6D90|1|2|C|539
6D90|1|2|U|540
6D90|1|2|U|541
6D90|1|2|U|542
6D90|1|2|C|543
6D90|1|2|G|544
6D90|1|2|A|545

Current chains

Chain 2

18S rRNA

Nearby chains