Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6D90_0011/2/7:17No text annotation
homologous
HL_4V88_186
NA
HL_6D90_0021/2/69:80No text annotation
geometric
HL_361D_002
HL_13963.3
HL_6D90_0031/2/156:162GNRA related
homologous
HL_4V88_188
NA
HL_6D90_0041/2/196:203GNRA wlth tandem sheared
geometric
HL_4WF9_004
HL_81538.2
HL_6D90_0051/2/288:295T-loop with 1 bulged base
geometric
HL_4V88_191
NA
HL_6D90_1221/2/317:333No text annotation
HL_6D90_0061/2/320:331No text annotation
HL_6D90_0071/2/377:387No text annotation
HL_6D90_0081/2/416:421No text annotation
homologous
HL_4V88_194
NA
HL_6D90_0091/2/441:452No text annotation
homologous
HL_4V88_195
NA
HL_6D90_0101/2/462:467UNCG
homologous
HL_4V88_196
NA
HL_6D90_0111/2/498:504No text annotation
homologous
HL_4V88_197
NA
HL_6D90_0121/2/538:545No text annotation
geometric
HL_8VTW_025
NA
HL_6D90_1241/2/566:584No text annotation
HL_6D90_0131/2/569:581No text annotation
geometric
HL_4V88_199
NA
HL_6D90_0141/2/618:623GNRA variation
homologous
HL_4V88_200
NA
HL_6D90_0151/2/696:730No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_6D90_0161/2/820:828No text annotation
homologous
HL_4V88_203
NA
HL_6D90_0171/2/833:841Externally structured
geometric
HL_8C3A_022
NA
HL_6D90_1501/2/885:901No text annotation
HL_6D90_1511/2/957:966No text annotation
homologous
HL_8P9A_209
HL_75293.5
HL_6D90_0201/2/994:999GNRA
homologous
HL_4V88_207
NA
HL_6D90_0211/2/1054:1064No text annotation
homologous
HL_4V88_208
NA
HL_6D90_0221/2/1114:1119No text annotation
HL_6D90_0231/2/1141:1146GNRA
homologous
HL_4V88_210
NA
HL_6D90_0241/2/1178:1183GNRA
homologous
HL_4V88_211
NA
HL_6D90_0251/2/1245:1254No text annotation
homologous
HL_4V88_212
NA
HL_6D90_1521/2/1295:1304GNRA wlth extra near cWW
homologous
HL_8P9A_216
HL_81538.2
HL_6D90_0271/2/1353:1358GNRA
homologous
HL_4V88_214
NA
HL_6D90_1261/2/1363:1375No text annotation
HL_6D90_0281/2/1366:1373No text annotation
homologous
HL_4V88_215
NA
HL_6D90_0291/2/1416:1424No text annotation
HL_6D90_0301/2/1460:1466GNRA
homologous
HL_4V88_217
NA
HL_6D90_0311/2/1565:1570GNRA
homologous
HL_4V88_218
NA
HL_6D90_0321/2/1614:1625No text annotation
homologous
HL_4V88_219
NA
HL_6D90_0331/2/1658:1666No text annotation
homologous
HL_4V88_220
NA
HL_6D90_1531/2/1760:1772No text annotation
HL_6D90_0351/2/1847:1852GNRA variation
homologous
HL_4V88_222
NA
HL_6D90_0361/3/12:24No text annotation
homologous
HL_1SER_001
NA
HL_6D90_1541/3/32:40tRNA anticodon loop
homologous
HL_9DFC_104
HL_06059.7
HL_6D90_1291/3/47:56No text annotation
homologous
HL_4WSM_251
HL_75293.5
HL_6D90_0381/3/48:56No text annotation
HL_6D90_0391/3/64:72T-loop with 2 stacked bulged bases
homologous
HL_5HR7_006
HL_28252.9
HL_6D90_0401/4/6053:6073No text annotation
HL_6D90_0411/4/6110:6115No text annotation
HL_6D90_0421/4/6141:6147No text annotation
HL_6D90_1551/4/6184:6193No text annotation
HL_6D90_0441/5/37:44No text annotation
geometric
HL_5TBW_001
NA
HL_6D90_0451/5/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_6D90_0461/5/89:95No text annotation
homologous
HL_5TBW_003
NA
HL_6D90_1561/5/130:138No text annotation
HL_6D90_0471/5/131:137No text annotation
geometric
HL_4V88_198
NA
HL_6D90_0481/5/204:211T-loop with 2 stacked bulged bases
homologous
HL_5TBW_005
NA
HL_6D90_0491/5/222:226No text annotation
homologous
HL_8C3A_006
NA
HL_6D90_0501/5/230:238T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_6D90_0511/5/289:298No text annotation
homologous
HL_5TBW_008
NA
HL_6D90_0521/5/314:323Pseudoknot geometry
homologous
HL_5TBW_009
NA
HL_6D90_0531/5/368:373GNRA
homologous
HL_5TBW_010
NA
HL_6D90_1331/5/393:398GNRA
homologous
HL_8P9A_123
HL_37824.8
HL_6D90_1571/5/520:641No text annotation
HL_6D90_0561/5/759:904No text annotation
geometric
HL_4V9F_003
HL_75660.5
HL_6D90_0571/5/1178:1183No text annotation
geometric
HL_8P9A_134
HL_70782.2
HL_6D90_0581/5/1317:1326T-loop with 2 stacked bulged bases
homologous
HL_5TBW_014
NA
HL_6D90_1581/5/1364:1373No text annotation
HL_6D90_0601/5/1389:1394GNRA
homologous
HL_5TBW_016
NA
HL_6D90_0611/5/1404:1413No text annotation
HL_6D90_0621/5/1436:1448Purine riboswitch
geometric
HL_4LX6_002
HL_31585.4
HL_6D90_0631/5/1479:1486No text annotation
geometric
HL_5J7L_018
HL_37344.1
HL_6D90_0641/5/1561:1566GNRA
homologous
HL_8C3A_019
NA
HL_6D90_0651/5/1593:1602No text annotation
homologous
HL_5TBW_020
NA
HL_6D90_0661/5/1627:1635No text annotation
homologous
HL_8C3A_021
NA
HL_6D90_0671/5/1675:1680No text annotation
geometric
HL_7A0S_024
HL_55195.3
HL_6D90_1591/5/1759:1773No text annotation
HL_6D90_0681/5/1761:1771No text annotation
HL_6D90_0691/5/1814:1824No text annotation
HL_6D90_0701/5/1864:1870GNRA
homologous
HL_5TBW_025
NA
HL_6D90_0711/5/1885:1894No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_6D90_1391/5/1973:1993No text annotation
HL_6D90_0721/5/1978:1988No text annotation
homologous
HL_8C3A_027
NA
HL_6D90_0731/5/2005:2014No text annotation
homologous
HL_5TBW_028
NA
HL_6D90_0741/5/2087:2270No text annotation
HL_6D90_0751/5/2317:2322GNRA
homologous
HL_8C3A_030
NA
HL_6D90_0761/5/2375:2385No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_6D90_1601/5/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_8CRE_031
HL_57176.2
HL_6D90_0781/5/2458:2463GNRA variation
homologous
HL_8C3A_033
NA
HL_6D90_1411/5/2486:2492No text annotation
HL_6D90_0791/5/2487:2491No text annotation
HL_6D90_0801/5/2523:2532No text annotation
homologous
HL_8C3A_035
NA
HL_6D90_0811/5/2561:2566GNRA
geometric
HL_6CZR_095
NA
HL_6D90_0821/5/2578:2583GNRA
homologous
HL_8C3A_036
NA
HL_6D90_1611/5/2624:2632Pseudoknot geometry
homologous
HL_8P9A_148
HL_77082.1
HL_6D90_0841/5/2664:2670No text annotation
homologous
HL_8C3A_038
NA
HL_6D90_1431/5/2704:2712No text annotation
HL_6D90_0851/5/2705:2710No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_6D90_0861/5/2738:2742No text annotation
homologous
HL_8C3A_040
NA
HL_6D90_0871/5/2792:2799No text annotation
homologous
HL_5TBW_041
NA
HL_6D90_0881/5/2810:2816GNRA
homologous
HL_8C3A_042
NA
HL_6D90_0891/5/2872:2877UNCG
homologous
HL_8C3A_043
NA
HL_6D90_1621/5/2901:3598No text annotation
HL_6D90_0911/5/3614:3618No text annotation
homologous
HL_8C3A_045
NA
HL_6D90_0921/5/3639:3649No text annotation
homologous
HL_5TBW_046
NA
HL_6D90_0931/5/3668:3674GNRA
homologous
HL_8C3A_047
NA
HL_6D90_1631/5/3724:3729GNRA
homologous
HL_8P9A_159
HL_37824.8
HL_6D90_0951/5/3757:3767No text annotation
homologous
HL_5TBW_049
NA
HL_6D90_0961/5/3796:3804No text annotation
homologous
HL_5TBW_050
NA
HL_6D90_0971/5/3873:3882No text annotation
homologous
HL_8C3A_051
NA
HL_6D90_1451/5/3976:4035No text annotation
geometric
HL_1KH6_003
HL_27483.1
HL_6D90_0981/5/4193:4201No text annotation
homologous
HL_5TBW_054
NA
HL_6D90_0991/5/4210:4222No text annotation
homologous
HL_5TBW_055
NA
HL_6D90_1001/5/4249:4259No text annotation
geometric
HL_5J7L_188
NA
HL_6D90_1011/5/4270:4277Pseudoknot geometry
geometric
HL_5TBW_057
NA
HL_6D90_1021/5/4301:4309No text annotation
homologous
HL_8C3A_059
NA
HL_6D90_1031/5/4321:4326GNRA
homologous
HL_5TBW_059
NA
HL_6D90_1041/5/4352:4362No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_6D90_1051/5/4417:4425No text annotation
homologous
HL_5TBW_061
NA
HL_6D90_1061/5/4474:4481No text annotation
homologous
HL_8C3A_063
NA
HL_6D90_1641/5/4495:4505No text annotation
HL_6D90_1081/5/4540:4545GNRA
homologous
HL_5TBW_064
NA
HL_6D90_1091/5/4603:4608GNRA related
geometric
HL_3OXE_002
HL_04783.2
HL_6D90_1651/5/4646:4651No text annotation
homologous
HL_8CRE_065
HL_65794.5
HL_6D90_1111/5/4688:4702No text annotation
homologous
HL_5TBW_067
NA
HL_6D90_1121/5/4776:4859No text annotation
geometric
HL_4V9F_003
HL_75660.5
HL_6D90_1471/5/4903:4918No text annotation
HL_6D90_1131/5/4906:4915No text annotation
HL_6D90_1141/5/4975:4983No text annotation
homologous
HL_8C3A_071
NA
HL_6D90_1151/5/5021:5028Externally structured
geometric
HL_8C3A_022
NA
HL_6D90_1481/7/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_6D90_1161/7/36:41No text annotation
geometric
HL_5TBW_185
NA
HL_6D90_1171/7/86:91GNRA
homologous
HL_5TBW_186
NA
HL_6D90_1661/8/46:57No text annotation
HL_6D90_1181/8/47:56Pseudoknot with intercalation
geometric
HL_7A0S_001
HL_93438.2
HL_6D90_1191/8/68:90No text annotation
HL_6D90_1201/8/107:112No text annotation
homologous
HL_5TBW_075
NA
HL_6D90_1211/8/121:129No text annotation
geometric
HL_8KAL_003
HL_75660.5

Problematic loops

#loop idProblemSequence
HL_6D90_123No text annotation
HL_6D90_018No text annotation
HL_6D90_125No text annotation
HL_6D90_019No text annotation
HL_6D90_026No text annotation
HL_6D90_127No text annotation
HL_6D90_128No text annotation
HL_6D90_034No text annotation
HL_6D90_037No text annotation
HL_6D90_130No text annotation
HL_6D90_043No text annotation
HL_6D90_131No text annotation
HL_6D90_132No text annotation
HL_6D90_054GNRA with extra cWW
HL_6D90_055No text annotation
HL_6D90_134No text annotation
HL_6D90_135No text annotation
HL_6D90_059No text annotation
HL_6D90_136No text annotation
HL_6D90_137No text annotation
HL_6D90_138No text annotation
HL_6D90_077No text annotation
HL_6D90_140GNRA with extra cWW
HL_6D90_142tRNA anticodon loop
HL_6D90_083No text annotation
HL_6D90_090No text annotation
HL_6D90_094No text annotation
HL_6D90_144GNRA with extra cWW
HL_6D90_107No text annotation
HL_6D90_146No text annotation
HL_6D90_110No text annotation
HL_6D90_149No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6D90_0011/2/23:25,
1/2/649:651
Isolated non-canonical cWW pair
geometric
IL_3MEI_002
IL_87907.2
IL_6D90_0021/2/34:36,
1/2/519:521
Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_6D90_3341/2/37:40,
1/2/514:518
Double sheared
geometric
IL_4WF9_016
IL_09705.15
IL_6D90_0041/2/41:47,
1/2/479:481
No text annotation
geometric
IL_4V88_387
NA
IL_6D90_0051/2/49:51,
1/2/476:477
Minor groove platform
homologous
IL_4V88_388
NA
IL_6D90_0061/2/57:62,
1/2/86:88
No text annotation
homologous
IL_4V88_389
NA
IL_6D90_3351/2/63:68,
1/2/81:85
No text annotation
homologous
IL_8P9A_379
IL_21667.1
IL_6D90_0081/2/108:110,
1/2/351:353
Isolated non-canonical cWW pair
geometric
IL_3SZX_003
IL_87907.2
IL_6D90_2631/2/108:112,
1/2/349:353
Partly complementary
geometric
IL_7VYX_008
IL_49751.4
IL_6D90_0091/2/110:112,
1/2/349:351
Isolated non-canonical cWW pair
geometric
IL_5TBW_378
NA
IL_6D90_0101/2/112:121,
1/2/343:349
No text annotation
IL_6D90_0111/2/130:144,
1/2/175:182
No text annotation
IL_6D90_3361/2/145:151,
1/2/167:174
No text annotation
homologous
IL_8CRE_400
IL_80604.6
IL_6D90_0131/2/152:154,
1/2/164:166
Isolated non-canonical cWW contact
homologous
IL_4V88_395
NA
IL_6D90_0141/2/188:192,
1/2/207:211
Double sheared with non-canonical cWW
geometric
IL_5J7L_274
IL_17948.2
IL_6D90_0151/2/216:219,
1/2/302:309
Tandem non-canonical cWW pairs
geometric
IL_1GID_008
NA
IL_6D90_0161/2/223:288,
1/2/295:298
No text annotation
IL_6D90_2671/2/312:314,
1/2/336:337
Single bulged A
homologous
IL_8P9A_388
IL_31462.7
IL_6D90_0181/2/317:319,
1/2/332:333
No text annotation
IL_6D90_0191/2/359:364,
1/2/396:403
Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_6D90_0201/2/366:371,
1/2/393:394
No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_6D90_0211/2/411:413,
1/2/424:429
No text annotation
homologous
IL_4V88_404
NA
IL_6D90_0221/2/437:439,
1/2/454:456
Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_6D90_0231/2/459:461,
1/2/468:470
Isolated near basepair
homologous
IL_4V88_406
NA
IL_6D90_0241/2/487:489,
1/2/511:512
Single bulged U
geometric
IL_4LFB_014
IL_89505.4
IL_6D90_0251/2/491:496,
1/2/506:509
C-loop with extra cWW pair
homologous
IL_4V88_408
NA
IL_6D90_0261/2/529:530,
1/2/554:556
Single bulged A
homologous
IL_4V88_409
NA
IL_6D90_3371/2/529:532,
1/2/552:556
No text annotation
geometric
IL_6XJQ_002
IL_48444.6
IL_6D90_0271/2/534:538,
1/2/545:550
No text annotation
IL_6D90_0281/2/563:565,
1/2/585:592
No text annotation
homologous
IL_8C3A_420
NA
IL_6D90_0291/2/566:569,
1/2/581:584
tSH-tHW
geometric
IL_5UNE_005
IL_85033.2
IL_6D90_3381/2/599:608,
1/2/635:637
No text annotation
IL_6D90_0311/2/611:617,
1/2/624:632
Kink-turn related
homologous
IL_4V88_415
NA
IL_6D90_0321/2/663:665,
1/2/1162:1164
Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_87907.2
IL_6D90_0331/2/665:671,
1/2/1161:1162
No text annotation
homologous
IL_4V88_416
NA
IL_6D90_0341/2/673:675,
1/2/1030:1032
Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_6D90_0351/2/676:680,
1/2/1025:1029
tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_6D90_3391/2/691:695,
1/2/731:735
Partly complementary
geometric
IL_8D29_010
IL_49751.4
IL_6D90_0361/2/692:695,
1/2/731:734
Tandem non-canonical cWW pairs
geometric
IL_4WF9_110
IL_51479.1
IL_6D90_0371/2/744:750,
1/2/793:797
No text annotation
IL_6D90_0381/2/752:754,
1/2/790:791
No text annotation
IL_6D90_0391/2/802:803,
1/2/860:863
Major groove minor groove platform; mini C-loop
homologous
IL_4V88_423
NA
IL_6D90_0401/2/804:807,
1/2/856:859
Tandem non-canonical cWW pairs
geometric
IL_1JID_002
IL_85033.2
IL_6D90_3401/2/805:815,
1/2/849:858
No text annotation
IL_6D90_0411/2/807:816,
1/2/848:856
No text annotation
IL_6D90_0421/2/876:879,
1/2/907:910
Tandem non-canonical cWW pairs
geometric
IL_5TBW_100
NA
IL_6D90_0431/2/922:923,
1/2/1019:1022
Major groove platform; stack outside cWW
homologous
IL_4V88_428
NA
IL_6D90_0441/2/924:927,
1/2/1014:1018
Tandem non-canonical cWW pairs
homologous
IL_4V88_429
NA
IL_6D90_2731/2/925:931,
1/2/1010:1017
No text annotation
IL_6D90_0451/2/927:931,
1/2/1010:1014
No text annotation
geometric
IL_5TBW_121
NA
IL_6D90_0461/2/931:935,
1/2/1007:1010
Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_6D90_3411/2/942:945,
1/2/981:984
Tandem non-canonical cWW pairs
homologous
IL_8P9A_421
IL_85033.2
IL_6D90_0481/2/952:956,
1/2/967:974
Kink-turn
homologous
IL_4V88_434
NA
IL_6D90_0491/2/1042:1051,
1/2/1067:1073
No text annotation
IL_6D90_0501/2/1091:1093,
1/2/1152:1158
No text annotation
homologous
IL_4V88_437
NA
IL_6D90_0511/2/1098:1101,
1/2/1131:1134
Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_6D90_2771/2/1098:1103,
1/2/1129:1134
No text annotation
geometric
IL_6O5F_001
NA
IL_6D90_0521/2/1101:1103,
1/2/1129:1131
Isolated non-canonical cWW pair
geometric
IL_4WF9_083
IL_87907.2
IL_6D90_0531/2/1108:1110,
1/2/1123:1124
Minor groove platform
geometric
IL_4V88_412
NA
IL_6D90_0541/2/1168:1175,
1/2/1186:1191
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_6D90_0551/2/1203:1204,
1/2/1694:1696
Single bulged A
homologous
IL_4V88_441
NA
IL_6D90_0561/2/1206:1208,
1/2/1691:1692
Single bulged G
homologous
IL_4V88_442
NA
IL_6D90_0571/2/1214:1217,
1/2/1681:1685
C-loop
homologous
IL_4V88_443
NA
IL_6D90_0581/2/1230:1232,
1/2/1526:1528
Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_6D90_0591/2/1235:1236,
1/2/1521:1523
Minor groove platform
homologous
IL_4V88_445
NA
IL_6D90_0601/2/1270:1272,
1/2/1510:1512
Isolated non-canonical cWW pair
homologous
IL_4V88_446
NA
IL_6D90_0611/2/1280:1287,
1/2/1314:1317
No text annotation
IL_6D90_3421/2/1281:1290,
1/2/1309:1316
No text annotation
homologous
IL_8P9A_470
IL_28304.1
IL_6D90_0621/2/1287:1290,
1/2/1309:1314
No text annotation
IL_6D90_0631/2/1291:1294,
1/2/1305:1308
No text annotation
IL_6D90_0641/2/1325:1327,
1/2/1502:1503
Single bulged U
homologous
IL_4V88_449
NA
IL_6D90_0651/2/1328:1333,
1/2/1498:1501
Tandem non-canonical cWW pairs
geometric
IL_4V88_473
NA
IL_6D90_3431/2/1329:1335,
1/2/1492:1500
No text annotation
homologous
IL_8P9A_439
IL_86012.1
IL_6D90_0661/2/1333:1335,
1/2/1492:1498
Minor groove platform with extra cWW
geometric
IL_4V88_451
NA
IL_6D90_0671/2/1337:1338,
1/2/1488:1490
Single bulged A
homologous
IL_4V88_452
NA
IL_6D90_0681/2/1347:1349,
1/2/1380:1382
Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_6D90_0691/2/1363:1365,
1/2/1374:1375
Minor groove platform
homologous
IL_8C3A_460
NA
IL_6D90_0701/2/1395:1399,
1/2/1447:1450
Tandem non-canonical cWW pairs
geometric
IL_3WBM_003
IL_85033.2
IL_6D90_0711/2/1402:1406,
1/2/1440:1444
No text annotation
IL_6D90_0721/2/1412:1413,
1/2/1427:1429
Single bulged G
geometric
IL_5J7L_019
IL_00225.14
IL_6D90_2841/2/1537:1539,
1/2/1594:1596
Isolated non-canonical cWW pair
geometric
IL_4X4N_005
IL_87907.2
IL_6D90_2851/2/1540:1550,
1/2/1582:1593
No text annotation
IL_6D90_0741/2/1550:1558,
1/2/1577:1582
180 degree turn
geometric
IL_5J7L_055
IL_11344.2
IL_6D90_0751/2/1560:1562,
1/2/1573:1575
Isolated non-canonical cWW pair
geometric
IL_4WF9_018
IL_07785.1
IL_6D90_0761/2/1604:1610,
1/2/1629:1635
No text annotation
homologous
IL_8C3A_469
NA
IL_6D90_0771/2/1700:1702,
1/2/1833:1836
No text annotation
geometric
IL_4V88_463
NA
IL_6D90_0781/2/1702:1705,
1/2/1829:1833
No text annotation
geometric
IL_4V88_464
NA
IL_6D90_0791/2/1705:1708,
1/2/1826:1829
Tandem non-canonical cWW pairs
geometric
IL_5EW4_002
IL_85033.2
IL_6D90_2861/2/1705:1711,
1/2/1822:1829
No text annotation
IL_6D90_0801/2/1708:1711,
1/2/1822:1826
No text annotation
IL_6D90_0811/2/1714:1717,
1/2/1816:1819
Tandem non-canonical cWW pairs
geometric
IL_5J7L_283
IL_85033.2
IL_6D90_0821/2/1717:1720,
1/2/1813:1816
Double sheared
homologous
IL_4V88_468
NA
IL_6D90_0831/2/1720:1722,
1/2/1812:1813
Single bulged U
geometric
IL_4V88_469
NA
IL_6D90_3441/2/1729:1731,
1/2/1803:1805
Isolated non-canonical cWW pair
homologous
IL_8CRE_473
IL_07785.1
IL_6D90_0851/2/1733:1736,
1/2/1798:1801
Double sheared
homologous
IL_4V88_471
NA
IL_6D90_0861/2/1739:1741,
1/2/1793:1795
Isolated non-canonical cWW pair
geometric
IL_5Y85_006
IL_87907.2
IL_6D90_3451/2/1742:1746,
1/2/1788:1792
Triple sheared
homologous
IL_8CRE_476
IL_50730.2
IL_6D90_3461/2/1750:1752,
1/2/1780:1784
No text annotation
IL_6D90_0891/3/46:48,
1/3/56:57
Single stack bend
geometric
IL_5TBW_035
NA
IL_6D90_0901/4/6050:6053,
1/4/6073:6076
No text annotation
IL_6D90_0911/4/6127:6129,
1/4/6157:6159
No text annotation
IL_6D90_2891/4/6130:6139,
1/4/6149:6156
No text annotation
IL_6D90_0921/4/6132:6139,
1/4/6149:6154
No text annotation
IL_6D90_3471/4/6181:6183,
1/4/6194:6195
No text annotation
IL_6D90_0941/5/6:7,
1/8/149:151
Single bulged C
homologous
IL_8C3A_002
NA
IL_6D90_0951/5/12:14,
1/8/143:144
Single bulged U
homologous
IL_8C3A_003
NA
IL_6D90_0961/5/16:18,
1/8/139:141
Isolated non-canonical cWW pair
geometric
IL_5ED2_004
NA
IL_6D90_0971/5/26:27,
1/5/55:57
Single stack bend
homologous
IL_5TBW_004
NA
IL_6D90_0981/5/30:37,
1/5/44:52
No text annotation
homologous
IL_8C3A_005
NA
IL_6D90_0991/5/81:88,
1/5/96:102
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_006
NA
IL_6D90_1001/5/118:121,
1/5/152:153
Major groove intercalation
geometric
IL_1U9S_003
IL_82107.5
IL_6D90_2921/5/118:122,
1/5/147:153
No text annotation
IL_6D90_1011/5/121:122,
1/5/147:152
No text annotation
homologous
IL_8C3A_007
NA
IL_6D90_1021/5/125:126,
1/5/142:144
Single bulged C
geometric
IL_1S03_006
IL_61258.15
IL_6D90_1031/5/168:173,
1/5/263:267
No text annotation
IL_6D90_1041/5/180:189,
1/5/252:256
No text annotation
IL_6D90_1051/5/195:196,
1/5/244:246
Single bulged C
geometric
IL_1DQF_001
IL_61258.15
IL_6D90_1061/5/199:201,
1/5/214:215
Single bulged U
homologous
IL_8C3A_013
NA
IL_6D90_1071/5/339:342,
1/8/32:33
Minor groove platform
geometric
IL_7RQB_073
NA
IL_6D90_1081/5/348:350,
1/8/25:26
Single bulged A
homologous
IL_8C3A_014
NA
IL_6D90_1091/5/387:390,
1/5/401:414
No text annotation
geometric
IL_5TBW_014
NA
IL_6D90_1101/5/415:421,
1/8/13:19
Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_6D90_1111/5/443:446,
1/5/1300:1304
No text annotation
geometric
IL_6AZ4_001
NA
IL_6D90_2951/5/448:450,
1/5/1297:1298
No text annotation
IL_6D90_1131/5/459:460,
1/5/695:697
Single bulged C
geometric
IL_1S03_006
IL_61258.15
IL_6D90_1141/5/462:464,
1/5/691:693
Isolated non-canonical cWW pair
geometric
IL_4J50_002
IL_87907.2
IL_6D90_3481/5/466:472,
1/5/682:689
No text annotation
IL_6D90_1161/5/480:485,
1/5/671:674
No text annotation
IL_6D90_1171/5/487:488,
1/5/665:669
Multiple bulged bases
geometric
IL_6JXM_001
IL_84476.1
IL_6D90_1181/5/491:493,
1/5/661:662
No text annotation
IL_6D90_1191/5/497:499,
1/5/656:657
Single bulged C
geometric
IL_3W3S_001
IL_61258.15
IL_6D90_3491/5/508:510,
1/5/649:650
Single bulged A
geometric
IL_4R4V_003
IL_31462.7
IL_6D90_1211/5/709:710,
1/5/1286:1288
No text annotation
IL_6D90_1221/5/723:724,
1/5/942:945
Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_6D90_1231/5/727:731,
1/5/938:939
No text annotation
IL_6D90_1241/5/732:735,
1/5/928:937
No text annotation
IL_6D90_1251/5/737:740,
1/5/923:926
No text annotation
IL_6D90_3001/5/737:743,
1/5/921:926
No text annotation
IL_6D90_1261/5/740:743,
1/5/921:923
No text annotation
IL_6D90_3011/5/745:752,
1/5/911:919
No text annotation
geometric
IL_8C3A_022
NA
IL_6D90_1281/5/980:982,
1/5/1273:1275
Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_6D90_1291/5/1074:1077,
1/5/1233:1236
Tandem non-canonical cWW pairs
geometric
IL_6CZR_168
NA
IL_6D90_1301/5/1077:1081,
1/5/1218:1233
No text annotation
IL_6D90_1311/5/1082:1084,
1/5/1213:1217
Isolated cWS basepair
geometric
IL_4TS2_003
NA
IL_6D90_1321/5/1086:1087,
1/5/1209:1211
No text annotation
IL_6D90_1331/5/1097:1098,
1/5/1197:1199
Single stack bend
geometric
IL_4C7O_002
IL_90729.1
IL_6D90_3501/5/1100:1168,
1/5/1193:1195
No text annotation
IL_6D90_1351/5/1173:1175,
1/5/1186:1188
Isolated cWH basepair
geometric
IL_3W3S_003
IL_10167.6
IL_6D90_1361/5/1357:1360,
1/5/1379:1382
No text annotation
IL_6D90_3511/5/1357:1361,
1/5/1376:1382
No text annotation
IL_6D90_1371/5/1360:1361,
1/5/1376:1379
Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_6D90_1381/5/1425:1429,
1/5/1455:1460
Triple sheared related
geometric
IL_4V9F_018
IL_97631.1
IL_6D90_3521/5/1431:1434,
1/5/1450:1453
Double sheared
geometric
IL_6YML_002
IL_09705.15
IL_6D90_3081/5/1467:1468,
1/5/1496:1498
Single bulged A
homologous
IL_8P9A_252
IL_31462.7
IL_6D90_1411/5/1474:1476,
1/5/1489:1490
Single stack bend
geometric
IL_7A0S_005
IL_90729.1
IL_6D90_1421/5/1520:1522,
1/5/1655:1657
Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_6D90_1431/5/1522:1526,
1/5/1648:1655
tHW-tHW cross-strand stack
homologous
IL_5TBW_028
NA
IL_6D90_1441/5/1550:1551,
1/5/1576:1578
Single bulged G
homologous
IL_8C3A_032
NA
IL_6D90_3091/5/1550:1555,
1/5/1572:1578
No text annotation
geometric
IL_4V88_462
NA
IL_6D90_1451/5/1551:1555,
1/5/1572:1576
Triple sheared
geometric
IL_5TBW_030
NA
IL_6D90_1461/5/1586:1589,
1/5/1605:1607
Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_6D90_1471/5/1590:1592,
1/5/1603:1604
Single bulged U
homologous
IL_5TBW_032
NA
IL_6D90_1481/5/1624:1626,
1/5/1636:1640
Multiple bulged bases
geometric
IL_5J7L_265
IL_06549.2
IL_6D90_1491/5/1671:1673,
1/5/1682:1684
Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_6D90_1501/5/1685:1688,
1/5/1848:1852
No text annotation
IL_6D90_1511/5/1694:1722,
1/5/1840:1842
No text annotation
IL_6D90_1521/5/1723:1725,
1/5/1838:1839
Single bulged G
homologous
IL_8C3A_040
NA
IL_6D90_1531/5/1732:1738,
1/5/1790:1797
No text annotation
IL_6D90_1541/5/1739:1745,
1/5/1785:1789
No text annotation
geometric
IL_4V9F_035
IL_06691.1
IL_6D90_3101/5/1739:1749,
1/5/1781:1789
No text annotation
IL_6D90_1551/5/1746:1749,
1/5/1781:1784
Tandem non-canonical cWW pairs
homologous
IL_5TBW_041
NA
IL_6D90_1561/5/1749:1751,
1/5/1779:1781
Isolated non-canonical cWW pair
geometric
IL_4LFB_059
IL_87907.2
IL_6D90_3531/5/1753:1756,
1/5/1776:1777
No text annotation
IL_6D90_3541/5/1858:1860,
1/5/1874:1876
Isolated non-canonical cWW pair
homologous
IL_8P9A_274
IL_87907.2
IL_6D90_1601/5/1905:1909,
1/5/2067:2071
UAA/GAN
homologous
IL_5TBW_048
NA
IL_6D90_1611/5/1911:1918,
1/5/2064:2065
SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_6D90_3111/5/1911:1920,
1/5/2063:2065
No text annotation
IL_6D90_1621/5/1918:1920,
1/5/2063:2064
No text annotation
IL_6D90_1631/5/1920:1922,
1/5/2062:2063
No text annotation
IL_6D90_1641/5/1926:1933,
1/5/2053:2058
No text annotation
geometric
IL_5TBW_051
NA
IL_6D90_1651/5/1933:1944,
1/5/2038:2053
No text annotation
geometric
IL_5TBW_052
NA
IL_6D90_3121/5/1945:1948,
1/5/2035:2037
Isolated non-canonical cWW pair
geometric
IL_1U6B_001
IL_57744.1
IL_6D90_1661/5/1946:1948,
1/5/2035:2036
Single bulged U
homologous
IL_5TBW_053
NA
IL_6D90_3551/5/1957:1965,
1/5/2022:2026
Kink-turn
homologous
IL_8CRE_057
IL_99692.2
IL_6D90_3561/5/1969:1972,
1/5/1994:2018
No text annotation
IL_6D90_1681/5/1973:1978,
1/5/1988:1993
No text annotation
IL_6D90_1691/5/2001:2005,
1/5/2014:2016
Major groove platform with extra cWW
geometric
IL_5D8H_003
IL_51387.3
IL_6D90_3571/5/2083:2085,
1/5/2272:2273
Single bulged U
geometric
IL_4LFB_046
IL_89505.4
IL_6D90_1711/5/2290:2292,
1/5/2342:2345
Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_6D90_1721/5/2299:2301,
1/5/2334:2335
Single bulged A
homologous
IL_8C3A_062
NA
IL_6D90_1731/5/2302:2309,
1/5/2329:2333
Kink-turn
homologous
IL_5TBW_059
NA
IL_6D90_1741/5/2312:2314,
1/5/2325:2326
Single bulged A
homologous
IL_5TBW_060
NA
IL_6D90_1751/5/2358:2364,
1/5/3858:3863
7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_6D90_1761/5/2415:2419,
1/5/2427:2429
C-loop
geometric
IL_7A0S_047
IL_83150.2
IL_6D90_1771/5/2446:2450,
1/5/2509:2514
UAA/GAN
homologous
IL_8C3A_067
NA
IL_6D90_3581/5/2477:2479,
1/5/2499:2500
Single stack bend
geometric
IL_9DFE_057
IL_26793.1
IL_6D90_1791/5/2541:2547,
1/5/2772:2775
Tandem non-canonical cWW pairs
geometric
IL_5J7L_033
IL_85033.2
IL_6D90_1801/5/2549:2550,
1/5/2768:2770
Single bulged U
geometric
IL_2A64_002
IL_89505.4
IL_6D90_1811/5/2589:2593,
1/5/2752:2756
Triple sheared
homologous
IL_5TBW_067
NA
IL_6D90_1821/5/2613:2614,
1/5/2724:2726
Single bulged A
geometric
IL_3MJA_001
NA
IL_6D90_1831/5/2614:2615,
1/5/2722:2724
Single stack bend
homologous
IL_5TBW_070
NA
IL_6D90_1841/5/2646:2648,
1/5/2685:2688
Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_85599.2
IL_6D90_1851/5/2651:2653,
1/5/2681:2682
Single bulged G
geometric
IL_3NDB_004
IL_00225.14
IL_6D90_1861/5/2656:2662,
1/5/2672:2678
Kink-turn
homologous
IL_5TBW_073
NA
IL_6D90_1871/5/2704:2705,
1/5/2710:2712
No text annotation
IL_6D90_1881/5/2832:2838,
1/5/3850:3853
No text annotation
homologous
IL_8C3A_080
NA
IL_6D90_1891/5/2844:2846,
1/5/3842:3844
No text annotation
homologous
IL_8C3A_081
NA
IL_6D90_1901/5/2847:2850,
1/5/3840:3841
Major groove platform; stack outside cWW
homologous
IL_8C3A_082
NA
IL_6D90_3161/5/2847:2855,
1/5/3837:3841
No text annotation
homologous
IL_8P9A_305
IL_22854.4
IL_6D90_1911/5/2850:2855,
1/5/3837:3840
No text annotation
homologous
IL_8C3A_083
NA
IL_6D90_1921/5/2867:2872,
1/5/2877:2883
tSH-tSH-tHH-tHS
homologous
IL_5TBW_078
NA
IL_6D90_1931/5/2889:2891,
1/5/3610:3612
Isolated non-canonical cWW pair
homologous
IL_5TBW_079
NA
IL_6D90_1941/5/2896:2897,
1/5/3602:3605
No text annotation
homologous
IL_8C3A_086
NA
IL_6D90_1951/5/3632:3633,
1/5/3827:3829
Single bulged A
homologous
IL_8C3A_087
NA
IL_6D90_1961/5/3659:3665,
1/5/3677:3685
No text annotation
IL_6D90_1971/5/3700:3703,
1/5/3749:3750
Major groove intercalation
homologous
IL_5TBW_084
NA
IL_6D90_3591/5/3704:3705,
1/5/3745:3748
No text annotation
homologous
IL_8CRE_090
IL_82107.5
IL_6D90_1991/5/3707:3710,
1/5/3741:3743
No text annotation
IL_6D90_3601/5/3708:3714,
1/5/3739:3742
No text annotation
IL_6D90_2001/5/3710:3714,
1/5/3739:3741
No text annotation
IL_6D90_2011/5/3714:3720,
1/5/3734:3739
No text annotation
IL_6D90_3611/5/3715:3721,
1/5/3732:3738
No text annotation
homologous
IL_8CRE_093
IL_88116.2
IL_6D90_2021/5/3720:3721,
1/5/3732:3734
Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_6D90_2031/5/3780:3781,
1/5/3811:3814
No text annotation
homologous
IL_8C3A_094
NA
IL_6D90_2041/5/3781:3794,
1/5/3806:3811
No text annotation
IL_6D90_2051/5/3895:3898,
1/5/4563:4565
No text annotation
homologous
IL_8C3A_096
NA
IL_6D90_2061/5/3900:3902,
1/5/4558:4561
No text annotation
homologous
IL_8C3A_097
NA
IL_6D90_2071/5/3913:3915,
1/5/4388:4389
Single bulged U
homologous
IL_5TBW_093
NA
IL_6D90_2081/5/3916:3917,
1/5/4384:4387
Minor groove platform
homologous
IL_5TBW_094
NA
IL_6D90_3621/5/3927:3929,
1/5/4181:4184
No text annotation
homologous
IL_8CRE_100
IL_85599.2
IL_6D90_2101/5/3948:3949,
1/5/4063:4065
No text annotation
IL_6D90_2111/5/3949:3952,
1/5/4060:4063
Tandem non-canonical cWW pairs
geometric
IL_5LQO_002
IL_85033.2
IL_6D90_3231/5/3954:3967,
1/5/4054:4058
No text annotation
IL_6D90_3631/5/3969:3973,
1/5/4038:4052
No text annotation
IL_6D90_2131/5/3970:3973,
1/5/4038:4051
No text annotation
IL_6D90_2141/5/4082:4088,
1/5/4161:4164
No text annotation
homologous
IL_5TBW_096
NA
IL_6D90_3641/5/4095:4100,
1/5/4108:4113
No text annotation
geometric
IL_3IGI_015
IL_82292.1
IL_6D90_2161/5/4191:4192,
1/5/4202:4204
Single bulged A
homologous
IL_5TBW_098
NA
IL_6D90_2171/5/4243:4245,
1/5/4263:4267
No text annotation
homologous
IL_8C3A_108
NA
IL_6D90_3651/5/4291:4293,
1/5/4317:4318
Single bulged A
geometric
IL_7MKY_001
IL_31462.7
IL_6D90_2191/5/4295:4298,
1/5/4312:4315
Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_6D90_2201/5/4347:4350,
1/5/4364:4365
Single stack bend
geometric
IL_5TBW_101
NA
IL_6D90_2211/5/4400:4401,
1/5/4442:4444
Major groove platform
geometric
IL_7A0S_073
IL_48076.6
IL_6D90_2221/5/4401:4403,
1/5/4440:4442
Isolated non-canonical cWW pair
homologous
IL_5TBW_103
NA
IL_6D90_2231/5/4403:4405,
1/5/4439:4440
Major groove platform
geometric
IL_5TBW_104
NA
IL_6D90_3261/5/4403:4407,
1/5/4435:4440
No text annotation
IL_6D90_2241/5/4405:4407,
1/5/4435:4439
Major groove minor groove platform with extra cWW
homologous
IL_5TBW_105
NA
IL_6D90_2251/5/4412:4416,
1/5/4426:4430
No text annotation
homologous
IL_8C3A_114
NA
IL_6D90_2261/5/4453:4454,
1/5/4526:4528
Major groove platform
homologous
IL_5TBW_107
NA
IL_6D90_2271/5/4456:4458,
1/5/4520:4524
Isolated non-canonical cWW with bulges
homologous
IL_5TBW_108
NA
IL_6D90_2281/5/4458:4459,
1/5/4517:4520
Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_6D90_3661/5/4466:4470,
1/5/4485:4491
No text annotation
IL_6D90_3671/5/4537:4538,
1/5/4547:4549
No text annotation
IL_6D90_2311/5/4580:4582,
1/5/4721:4723
Isolated cWH basepair
geometric
IL_3CZW_001
IL_10167.6
IL_6D90_2321/5/4582:4585,
1/5/4717:4721
Double sheared
geometric
IL_5J7L_256
IL_09705.15
IL_6D90_2331/5/4590:4592,
1/5/4618:4620
Isolated non-canonical cWW pair
homologous
IL_5TBW_115
NA
IL_6D90_2341/5/4596:4603,
1/5/4608:4614
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_116
NA
IL_6D90_2351/5/4624:4629,
1/5/4669:4673
No text annotation
IL_6D90_2361/5/4632:4637,
1/5/4662:4666
UAA/GAN related
homologous
IL_5TBW_118
NA
IL_6D90_2371/5/4638:4640,
1/5/4659:4661
Isolated non-canonical cWW pair
geometric
IL_1YZ9_001
NA
IL_6D90_2381/5/4641:4642,
1/5/4655:4658
Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_6D90_2391/5/4680:4685,
1/5/4705:4710
UAA/GAN with extra cWW
geometric
IL_5J7L_350
IL_49767.8
IL_6D90_2401/5/4737:4743,
1/5/4957:4962
No text annotation
IL_6D90_3681/5/4738:4746,
1/5/4954:4961
No text annotation
IL_6D90_2411/5/4743:4746,
1/5/4954:4957
Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_6D90_2421/5/4756:4766,
1/5/4868:4877
No text annotation
IL_6D90_2431/5/4769:4773,
1/5/4862:4865
No text annotation
IL_6D90_2441/5/4885:4888,
1/5/4931:4934
Tandem non-canonical cWW pairs
geometric
IL_4K27_003
IL_77658.1
IL_6D90_2451/5/4890:4896,
1/5/4924:4929
No text annotation
IL_6D90_3691/5/4890:4899,
1/5/4920:4929
No text annotation
IL_6D90_2461/5/4896:4899,
1/5/4920:4924
No text annotation
geometric
IL_6AZ4_001
NA
IL_6D90_2471/5/4992:4994,
1/5/5057:5059
Isolated non-canonical cWW pair
geometric
IL_3D0U_006
IL_87907.2
IL_6D90_2481/5/4996:4997,
1/5/5053:5055
No text annotation
IL_6D90_3301/5/5000:5002,
1/5/5045:5050
No text annotation
homologous
IL_8P9A_359
IL_43622.1
IL_6D90_2501/5/5003:5009,
1/5/5039:5044
No text annotation
IL_6D90_2511/5/5012:5014,
1/5/5035:5036
Single bulged C
geometric
IL_1S03_006
IL_61258.15
IL_6D90_2521/5/5014:5017,
1/5/5032:5035
Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_6D90_2531/7/15:16,
1/7/62:64
Single bulged A
homologous
IL_5TBW_372
NA
IL_6D90_2541/7/21:27,
1/7/52:57
Minor groove platform related
geometric
IL_5TBW_373
NA
IL_6D90_3701/7/21:29,
1/7/48:57
No text annotation
IL_6D90_2551/7/27:29,
1/7/48:52
No text annotation
IL_6D90_2561/7/32:36,
1/7/41:45
Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_6D90_2571/7/71:78,
1/7/98:104
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_6D90_2581/7/79:81,
1/7/95:97
Isolated non-canonical cWW pair
geometric
IL_4E48_004
IL_87907.2
IL_6D90_2591/7/82:85,
1/7/92:94
Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_6D90_2601/8/64:67,
1/8/91:95
No text annotation

Problematic loops

#loop idProblemSequence
IL_6D90_261Tandem non-canonical cWW pairs
IL_6D90_003Triple sheared related
IL_6D90_262No text annotation
IL_6D90_007No text annotation
IL_6D90_012No text annotation
IL_6D90_264No text annotation
IL_6D90_265No text annotation
IL_6D90_266No text annotation
IL_6D90_017Isolated non-canonical cWW pair
IL_6D90_268Tandem non-canonical cWW pairs
IL_6D90_269Partly complementary
IL_6D90_030No text annotation
IL_6D90_270No text annotation
IL_6D90_271No text annotation
IL_6D90_272No text annotation
IL_6D90_274Triple non-canonical cWW pairs
IL_6D90_047No text annotation
IL_6D90_275Kink-turn
IL_6D90_276No text annotation
IL_6D90_278Isolated non-canonical cWW with bulges
IL_6D90_279Isolated non-canonical cWW pair
IL_6D90_280No text annotation
IL_6D90_281No text annotation
IL_6D90_282No text annotation
IL_6D90_283No text annotation
IL_6D90_073Tandem non-canonical cWW pairs
IL_6D90_084tSH-tHW
IL_6D90_287No text annotation
IL_6D90_087No text annotation
IL_6D90_088No text annotation
IL_6D90_288No text annotation
IL_6D90_093No text annotation
IL_6D90_290Tandem non-canonical cWW pairs
IL_6D90_291No text annotation
IL_6D90_293No text annotation
IL_6D90_294No text annotation
IL_6D90_112Isolated non-canonical cWW pair
IL_6D90_296Partly complementary
IL_6D90_115No text annotation
IL_6D90_297No text annotation
IL_6D90_298Isolated non-canonical cWW contact
IL_6D90_299Isolated non-canonical cWW pair
IL_6D90_120No text annotation
IL_6D90_127No text annotation
IL_6D90_302Isolated non-canonical cWW pair
IL_6D90_303No text annotation
IL_6D90_134No text annotation
IL_6D90_304Tandem non-canonical cWW pairs
IL_6D90_305No text annotation
IL_6D90_306No text annotation
IL_6D90_307Double sheared; A in syn; two near cWW pairs
IL_6D90_139Double sheared with non-canonical cWW
IL_6D90_140Isolated non-canonical cWW pair
IL_6D90_157No text annotation
IL_6D90_158Tandem non-canonical cWW pairs
IL_6D90_159Isolated cWS basepair
IL_6D90_313No text annotation
IL_6D90_167No text annotation
IL_6D90_314No text annotation
IL_6D90_170Isolated non-canonical cWW pair
IL_6D90_315Tandem non-canonical cWW pairs
IL_6D90_178No text annotation
IL_6D90_317No text annotation
IL_6D90_318Isolated non-canonical cWW pair
IL_6D90_198No text annotation
IL_6D90_319No text annotation
IL_6D90_320No text annotation
IL_6D90_321No text annotation
IL_6D90_322No text annotation
IL_6D90_209No text annotation
IL_6D90_212No text annotation
IL_6D90_324No text annotation
IL_6D90_325No text annotation
IL_6D90_215No text annotation
IL_6D90_218Isolated non-canonical cWW pair
IL_6D90_229No text annotation
IL_6D90_230Other IL
IL_6D90_327No text annotation
IL_6D90_328No text annotation
IL_6D90_329No text annotation
IL_6D90_249No text annotation
IL_6D90_331No text annotation
IL_6D90_3329x8 Sarcin-Ricin; G-bulge
IL_6D90_333Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6D90_0011/2/40:41,
1/2/481:487,
1/2/512:514
No text annotation
geometric
J3_4V88_078
NA
J3_6D90_0291/2/40:47,
1/2/479:487,
1/2/512:514
No text annotation
homologous
J3_8P9A_069
J3_46317.4
J3_6D90_0021/2/816:819,
1/2/829:831,
1/2/843:848
No text annotation
homologous
J3_4V88_032
NA
J3_6D90_0031/2/938:941,
1/2/985:993,
1/2/1000:1004
No text annotation
homologous
J3_4V88_033
NA
J3_6D90_0041/2/1094:1096,
1/2/1136:1140,
1/2/1147:1151
No text annotation
J3_6D90_0051/2/1218:1221,
1/2/1645:1651,
1/2/1673:1680
No text annotation
homologous
J3_4V88_035
NA
J3_6D90_0481/2/1225:1228,
1/2/1530:1532,
1/2/1638:1641
No text annotation
homologous
J3_8P9A_077
J3_52655.4
J3_6D90_0071/2/1237:1244,
1/2/1255:1266,
1/2/1516:1520
No text annotation
geometric
J3_4V88_037
NA
J3_6D90_0311/2/1237:1244,
1/2/1255:1268,
1/2/1514:1520
No text annotation
J3_6D90_0321/2/1270:1277,
1/2/1320:1324,
1/2/1504:1512
No text annotation
J3_6D90_0081/2/1272:1277,
1/2/1320:1324,
1/2/1504:1510
No text annotation
homologous
J3_8C3A_041
NA
J3_6D90_0331/2/1340:1345,
1/2/1384:1389,
1/2/1481:1486
No text annotation
homologous
J3_8P9A_080
J3_99563.1
J3_6D90_0101/2/1350:1351,
1/2/1360:1363,
1/2/1375:1379
No text annotation
geometric
J3_8C3A_085
NA
J3_6D90_0351/2/1391:1395,
1/2/1450:1456,
1/2/1470:1479
No text annotation
J3_6D90_0111/2/1532:1536,
1/2/1597:1604,
1/2/1635:1638
No text annotation
homologous
J3_4V88_041
NA
J3_6D90_0121/5/112:116,
1/5/155:160,
1/5/275:278
No text annotation
J3_6D90_0361/5/351:367,
1/5/374:379,
1/8/21:24
No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_6D90_0131/5/380:387,
1/5/414:415,
1/8/19:20
No text annotation
homologous
J3_5TBW_002
NA
J3_6D90_0371/5/380:390,
1/5/401:415,
1/8/19:20
No text annotation
homologous
J3_8C3A_049
NA
J3_6D90_0381/5/451:456,
1/5/700:705,
1/5/1292:1296
No text annotation
J3_6D90_0141/5/982:984,
1/5/1070:1074,
1/5/1236:1273
No text annotation
J3_6D90_0151/5/1531:1537,
1/5/1622:1624,
1/5/1640:1643
No text annotation
homologous
J3_5TBW_004
NA
J3_6D90_0161/5/1545:1548,
1/5/1580:1584,
1/5/1609:1614
No text annotation
homologous
J3_5TBW_005
NA
J3_6D90_0491/5/1726:1727,
1/5/1802:1806,
1/5/1832:1837
No text annotation
homologous
J3_8P9A_051
J3_09667.1
J3_6D90_0171/5/1969:1973,
1/5/1993:2001,
1/5/2016:2018
No text annotation
J3_6D90_0181/5/2393:2399,
1/5/2805:2807,
1/5/2819:2822
No text annotation
homologous
J3_8C3A_006
NA
J3_6D90_0191/5/2402:2405,
1/5/2785:2791,
1/5/2800:2802
No text annotation
homologous
J3_8C3A_007
NA
J3_6D90_0201/5/2440:2445,
1/5/2515:2519,
1/5/2536:2537
No text annotation
homologous
J3_5TBW_010
NA
J3_6D90_0501/5/2451:2456,
1/5/2465:2476,
1/5/2501:2508
No text annotation
J3_6D90_0211/5/2551:2555,
1/5/2572:2575,
1/5/2757:2767
No text annotation
J3_6D90_0221/5/2575:2576,
1/5/2585:2589,
1/5/2756:2757
No text annotation
homologous
J3_8C3A_054
NA
J3_6D90_0411/5/2598:2602,
1/5/2737:2738,
1/5/2742:2747
No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_6D90_0511/5/3937:3939,
1/5/4074:4078,
1/5/4168:4173
Kink-turn 3-way junction
geometric
J3_5J7L_044
J3_89368.5
J3_6D90_0521/5/4091:4094,
1/5/4114:4130,
1/5/4154:4158
No text annotation
J3_6D90_0431/5/4228:4230,
1/5/4331:4342,
1/5/4370:4375
No text annotation
homologous
J3_8P9A_061
J3_20992.1
J3_6D90_0531/5/4241:4243,
1/5/4267:4269,
1/5/4278:4283
No text annotation
homologous
J3_8P9A_062
J3_61124.2
J3_6D90_0251/5/4463:4466,
1/5/4491:4494,
1/5/4506:4513
No text annotation
geometric
J3_4V9F_009
J3_69441.1
J3_6D90_0441/5/4749:4754,
1/5/4879:4884,
1/5/4935:4951
No text annotation
J3_6D90_0261/5/4970:4975,
1/5/4983:4991,
1/5/5060:5063
No text annotation
J3_6D90_0461/7/9:14,
1/7/65:66,
1/7/109:110
No text annotation
homologous
J3_8P9A_066
J3_12003.2
J3_6D90_0281/8/44:45,
1/8/58:64,
1/8/95:99
No text annotation
J3_6D90_0541/8/44:45,
1/8/58:66,
1/8/92:99
No text annotation
J4_6D90_0011/2/98:106,
1/2/355:357,
1/2/405:409,
1/2/431:432
No text annotation
homologous
J4_8C3A_021
NA
J4_6D90_0021/2/671:673,
1/2/1032:1037,
1/2/1078:1089,
1/2/1160:1161
No text annotation
homologous
J4_8P9A_022
J4_61885.6
J4_6D90_0031/5/196:199,
1/5/215:222,
1/5/226:228,
1/5/240:244
No text annotation
J4_6D90_0141/5/709:713,
1/5/955:984,
1/5/1070:1076,
1/5/1234:1288
No text annotation
J4_6D90_0151/5/2365:2371,
1/5/2389:2391,
1/5/2824:2829,
1/5/3856:3857
No text annotation
J4_6D90_0161/5/2406:2410,
1/5/2434:2439,
1/5/2538:2547,
1/5/2772:2784
No text annotation
J4_6D90_0171/5/2551:2555,
1/5/2572:2576,
1/5/2585:2593,
1/5/2752:2767
No text annotation
J4_6D90_0181/5/2618:2619,
1/5/2637:2642,
1/5/2692:2698,
1/5/2718:2719
No text annotation
J4_6D90_0091/5/2855:2863,
1/5/2887:2888,
1/5/3613:3626,
1/5/3835:3837
No text annotation
J4_6D90_0101/5/3634:3638,
1/5/3650:3654,
1/5/3690:3694,
1/5/3821:3826
No text annotation
homologous
J4_8P9A_017
J4_07509.2
J4_6D90_0191/5/3696:3698,
1/5/3752:3753,
1/5/3771:3792,
1/5/3808:3819
No text annotation
J4_6D90_0121/5/4231:4235,
1/5/4289:4291,
1/5/4318:4319,
1/5/4328:4330
No text annotation
J4_6D90_0201/5/4587:4590,
1/5/4620:4621,
1/5/4676:4678,
1/5/4712:4715
No text annotation
J5_6D90_0141/2/30:34,
1/2/521:527,
1/2/558:563,
1/2/592:595,
1/2/641:644
No text annotation
homologous
J5_8CRE_018
J5_80702.1
J5_6D90_0151/2/30:34,
1/2/521:527,
1/2/558:565,
1/2/585:595,
1/2/641:644
No text annotation
J5_6D90_0161/2/53:56,
1/2/89:96,
1/2/434:436,
1/2/457:461,
1/2/468:474
No text annotation
J5_6D90_0171/2/123:129,
1/2/183:185,
1/2/214:215,
1/2/310:312,
1/2/337:341
No text annotation
J5_6D90_0181/3/7:10,
1/3/26:28,
1/3/44:46,
1/3/57:60,
1/3/76:77
No text annotation
homologous
J5_3ZGZ_001
J5_20390.2
J5_6D90_0081/5/19:21,
1/8/35:42,
1/8/101:106,
1/8/113:114,
1/8/136:138
No text annotation
homologous
J5_8C3A_001
NA
J5_6D90_0191/5/111:116,
1/5/155:160,
1/5/275:283,
1/5/304:310,
1/5/327:330
No text annotation
J5_6D90_0201/5/1335:1340,
1/5/1516:1519,
1/5/1658:1661,
1/5/2288:2290,
1/5/2345:2351
No text annotation
homologous
J5_8P9A_011
J5_63811.1
J5_6D90_0111/5/2406:2410,
1/5/2434:2445,
1/5/2515:2519,
1/5/2536:2547,
1/5/2772:2784
No text annotation
J5_6D90_0211/5/3903:3910,
1/5/4392:4400,
1/5/4444:4453,
1/5/4528:4534,
1/5/4552:4557
No text annotation
J5_6D90_0221/5/3920:3923,
1/5/4188:4191,
1/5/4204:4205,
1/5/4227:4228,
1/5/4375:4381
No text annotation
homologous
J5_8P9A_015
J5_08912.1
J6_6D90_0061/2/682:690,
1/2/736:749,
1/2/794:800,
1/2/865:879,
1/2/907:922,
1/2/1022:1023
No text annotation
J6_6D90_0071/2/682:690,
1/2/736:749,
1/2/794:800,
1/2/865:879,
1/2/907:923,
1/2/1019:1023
No text annotation
J6_6D90_0031/5/21:26,
1/5/57:67,
1/5/74:78,
1/5/105:109,
1/5/332:342,
1/8/32:35
No text annotation
J6_6D90_0041/5/1352:1355,
1/5/1384:1388,
1/5/1395:1399,
1/5/1418:1421,
1/5/1464:1466,
1/5/1499:1504
No text annotation
J6_6D90_0081/5/3920:3923,
1/5/4188:4191,
1/5/4204:4205,
1/5/4227:4230,
1/5/4331:4342,
1/5/4370:4381
No text annotation
J6_6D90_0051/5/3920:3924,
1/5/4187:4191,
1/5/4204:4205,
1/5/4227:4230,
1/5/4331:4342,
1/5/4370:4381
No text annotation
J7_6D90_0021/5/1666:1671,
1/5/1684:1685,
1/5/1852:1855,
1/5/1879:1884,
1/5/1895:1900,
1/5/2076:2078,
1/5/2278:2283
No text annotation

Problematic loops

#loop idProblemSequence
J3_6D90_030No text annotation
J3_6D90_006No text annotation
J3_6D90_009No text annotation
J3_6D90_034No text annotation
J3_6D90_039No text annotation
J3_6D90_040No text annotation
J3_6D90_023No text annotation
J3_6D90_042No text annotation
J3_6D90_024No text annotation
J3_6D90_045No text annotation
J3_6D90_027No text annotation
J3_6D90_047No text annotation
J4_6D90_004No text annotation
J4_6D90_005No text annotation
J4_6D90_006No text annotation
J4_6D90_007No text annotation
J4_6D90_008No text annotation
J4_6D90_011No text annotation
J4_6D90_013No text annotation
J5_6D90_001No text annotation
J5_6D90_002No text annotation
J5_6D90_003No text annotation
J5_6D90_004No text annotation
J5_6D90_005No text annotation
J5_6D90_006No text annotation
J5_6D90_007No text annotation
J5_6D90_009No text annotation
J5_6D90_010No text annotation
J5_6D90_012No text annotation
J5_6D90_013No text annotation
J6_6D90_001No text annotation
J6_6D90_002No text annotation
J7_6D90_001No text annotation

Coloring options:
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