6D90 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_6D90_001 | 1/2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
HL_6D90_002 | 1/2/69:80 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
HL_6D90_003 | 1/2/156:162 | GNRA related | homologous HL_4V88_188 NA | |
HL_6D90_004 | 1/2/196:203 | GNRA wlth tandem sheared | geometric HL_4WF9_004 HL_81538.2 | |
HL_6D90_005 | 1/2/288:295 | T-loop with 1 bulged base | geometric HL_4V88_191 NA | |
HL_6D90_122 | 1/2/317:333 | No text annotation | ||
HL_6D90_006 | 1/2/320:331 | No text annotation | ||
HL_6D90_007 | 1/2/377:387 | No text annotation | ||
HL_6D90_008 | 1/2/416:421 | No text annotation | homologous HL_4V88_194 NA | |
HL_6D90_009 | 1/2/441:452 | No text annotation | homologous HL_4V88_195 NA | |
HL_6D90_010 | 1/2/462:467 | UNCG | homologous HL_4V88_196 NA | |
HL_6D90_011 | 1/2/498:504 | No text annotation | homologous HL_4V88_197 NA | |
HL_6D90_012 | 1/2/538:545 | No text annotation | geometric HL_8VTW_025 NA | |
HL_6D90_124 | 1/2/566:584 | No text annotation | ||
HL_6D90_013 | 1/2/569:581 | No text annotation | geometric HL_4V88_199 NA | |
HL_6D90_014 | 1/2/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
HL_6D90_015 | 1/2/696:730 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
HL_6D90_016 | 1/2/820:828 | No text annotation | homologous HL_4V88_203 NA | |
HL_6D90_017 | 1/2/833:841 | Externally structured | geometric HL_8C3A_022 NA | |
HL_6D90_150 | 1/2/885:901 | No text annotation | ||
HL_6D90_151 | 1/2/957:966 | No text annotation | homologous HL_8P9A_209 HL_75293.5 | |
HL_6D90_020 | 1/2/994:999 | GNRA | homologous HL_4V88_207 NA | |
HL_6D90_021 | 1/2/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
HL_6D90_022 | 1/2/1114:1119 | No text annotation | ||
HL_6D90_023 | 1/2/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
HL_6D90_024 | 1/2/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
HL_6D90_025 | 1/2/1245:1254 | No text annotation | homologous HL_4V88_212 NA | |
HL_6D90_152 | 1/2/1295:1304 | GNRA wlth extra near cWW | homologous HL_8P9A_216 HL_81538.2 | |
HL_6D90_027 | 1/2/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
HL_6D90_126 | 1/2/1363:1375 | No text annotation | ||
HL_6D90_028 | 1/2/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
HL_6D90_029 | 1/2/1416:1424 | No text annotation | ||
HL_6D90_030 | 1/2/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
HL_6D90_031 | 1/2/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
HL_6D90_032 | 1/2/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
HL_6D90_033 | 1/2/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
HL_6D90_153 | 1/2/1760:1772 | No text annotation | ||
HL_6D90_035 | 1/2/1847:1852 | GNRA variation | homologous HL_4V88_222 NA | |
HL_6D90_036 | 1/3/12:24 | No text annotation | homologous HL_1SER_001 NA | |
HL_6D90_154 | 1/3/32:40 | tRNA anticodon loop | homologous HL_9DFC_104 HL_06059.7 | |
HL_6D90_129 | 1/3/47:56 | No text annotation | homologous HL_4WSM_251 HL_75293.5 | |
HL_6D90_038 | 1/3/48:56 | No text annotation | ||
HL_6D90_039 | 1/3/64:72 | T-loop with 2 stacked bulged bases | homologous HL_5HR7_006 HL_28252.9 | |
HL_6D90_040 | 1/4/6053:6073 | No text annotation | ||
HL_6D90_041 | 1/4/6110:6115 | No text annotation | ||
HL_6D90_042 | 1/4/6141:6147 | No text annotation | ||
HL_6D90_155 | 1/4/6184:6193 | No text annotation | ||
HL_6D90_044 | 1/5/37:44 | No text annotation | geometric HL_5TBW_001 NA | |
HL_6D90_045 | 1/5/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
HL_6D90_046 | 1/5/89:95 | No text annotation | homologous HL_5TBW_003 NA | |
HL_6D90_156 | 1/5/130:138 | No text annotation | ||
HL_6D90_047 | 1/5/131:137 | No text annotation | geometric HL_4V88_198 NA | |
HL_6D90_048 | 1/5/204:211 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_005 NA | |
HL_6D90_049 | 1/5/222:226 | No text annotation | homologous HL_8C3A_006 NA | |
HL_6D90_050 | 1/5/230:238 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
HL_6D90_051 | 1/5/289:298 | No text annotation | homologous HL_5TBW_008 NA | |
HL_6D90_052 | 1/5/314:323 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
HL_6D90_053 | 1/5/368:373 | GNRA | homologous HL_5TBW_010 NA | |
HL_6D90_133 | 1/5/393:398 | GNRA | homologous HL_8P9A_123 HL_37824.8 | |
HL_6D90_157 | 1/5/520:641 | No text annotation | ||
HL_6D90_056 | 1/5/759:904 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
HL_6D90_057 | 1/5/1178:1183 | No text annotation | geometric HL_8P9A_134 HL_70782.2 | |
HL_6D90_058 | 1/5/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_014 NA | |
HL_6D90_158 | 1/5/1364:1373 | No text annotation | ||
HL_6D90_060 | 1/5/1389:1394 | GNRA | homologous HL_5TBW_016 NA | |
HL_6D90_061 | 1/5/1404:1413 | No text annotation | ||
HL_6D90_062 | 1/5/1436:1448 | Purine riboswitch | geometric HL_4LX6_002 HL_31585.4 | |
HL_6D90_063 | 1/5/1479:1486 | No text annotation | geometric HL_5J7L_018 HL_37344.1 | |
HL_6D90_064 | 1/5/1561:1566 | GNRA | homologous HL_8C3A_019 NA | |
HL_6D90_065 | 1/5/1593:1602 | No text annotation | homologous HL_5TBW_020 NA | |
HL_6D90_066 | 1/5/1627:1635 | No text annotation | homologous HL_8C3A_021 NA | |
HL_6D90_067 | 1/5/1675:1680 | No text annotation | geometric HL_7A0S_024 HL_55195.3 | |
HL_6D90_159 | 1/5/1759:1773 | No text annotation | ||
HL_6D90_068 | 1/5/1761:1771 | No text annotation | ||
HL_6D90_069 | 1/5/1814:1824 | No text annotation | ||
HL_6D90_070 | 1/5/1864:1870 | GNRA | homologous HL_5TBW_025 NA | |
HL_6D90_071 | 1/5/1885:1894 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
HL_6D90_139 | 1/5/1973:1993 | No text annotation | ||
HL_6D90_072 | 1/5/1978:1988 | No text annotation | homologous HL_8C3A_027 NA | |
HL_6D90_073 | 1/5/2005:2014 | No text annotation | homologous HL_5TBW_028 NA | |
HL_6D90_074 | 1/5/2087:2270 | No text annotation | ||
HL_6D90_075 | 1/5/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
HL_6D90_076 | 1/5/2375:2385 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
HL_6D90_160 | 1/5/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_8CRE_031 HL_57176.2 | |
HL_6D90_078 | 1/5/2458:2463 | GNRA variation | homologous HL_8C3A_033 NA | |
HL_6D90_141 | 1/5/2486:2492 | No text annotation | ||
HL_6D90_079 | 1/5/2487:2491 | No text annotation | ||
HL_6D90_080 | 1/5/2523:2532 | No text annotation | homologous HL_8C3A_035 NA | |
HL_6D90_081 | 1/5/2561:2566 | GNRA | geometric HL_6CZR_095 NA | |
HL_6D90_082 | 1/5/2578:2583 | GNRA | homologous HL_8C3A_036 NA | |
HL_6D90_161 | 1/5/2624:2632 | Pseudoknot geometry | homologous HL_8P9A_148 HL_77082.1 | |
HL_6D90_084 | 1/5/2664:2670 | No text annotation | homologous HL_8C3A_038 NA | |
HL_6D90_143 | 1/5/2704:2712 | No text annotation | ||
HL_6D90_085 | 1/5/2705:2710 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
HL_6D90_086 | 1/5/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
HL_6D90_087 | 1/5/2792:2799 | No text annotation | homologous HL_5TBW_041 NA | |
HL_6D90_088 | 1/5/2810:2816 | GNRA | homologous HL_8C3A_042 NA | |
HL_6D90_089 | 1/5/2872:2877 | UNCG | homologous HL_8C3A_043 NA | |
HL_6D90_162 | 1/5/2901:3598 | No text annotation | ||
HL_6D90_091 | 1/5/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
HL_6D90_092 | 1/5/3639:3649 | No text annotation | homologous HL_5TBW_046 NA | |
HL_6D90_093 | 1/5/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
HL_6D90_163 | 1/5/3724:3729 | GNRA | homologous HL_8P9A_159 HL_37824.8 | |
HL_6D90_095 | 1/5/3757:3767 | No text annotation | homologous HL_5TBW_049 NA | |
HL_6D90_096 | 1/5/3796:3804 | No text annotation | homologous HL_5TBW_050 NA | |
HL_6D90_097 | 1/5/3873:3882 | No text annotation | homologous HL_8C3A_051 NA | |
HL_6D90_145 | 1/5/3976:4035 | No text annotation | geometric HL_1KH6_003 HL_27483.1 | |
HL_6D90_098 | 1/5/4193:4201 | No text annotation | homologous HL_5TBW_054 NA | |
HL_6D90_099 | 1/5/4210:4222 | No text annotation | homologous HL_5TBW_055 NA | |
HL_6D90_100 | 1/5/4249:4259 | No text annotation | geometric HL_5J7L_188 NA | |
HL_6D90_101 | 1/5/4270:4277 | Pseudoknot geometry | geometric HL_5TBW_057 NA | |
HL_6D90_102 | 1/5/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
HL_6D90_103 | 1/5/4321:4326 | GNRA | homologous HL_5TBW_059 NA | |
HL_6D90_104 | 1/5/4352:4362 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
HL_6D90_105 | 1/5/4417:4425 | No text annotation | homologous HL_5TBW_061 NA | |
HL_6D90_106 | 1/5/4474:4481 | No text annotation | homologous HL_8C3A_063 NA | |
HL_6D90_164 | 1/5/4495:4505 | No text annotation | ||
HL_6D90_108 | 1/5/4540:4545 | GNRA | homologous HL_5TBW_064 NA | |
HL_6D90_109 | 1/5/4603:4608 | GNRA related | geometric HL_3OXE_002 HL_04783.2 | |
HL_6D90_165 | 1/5/4646:4651 | No text annotation | homologous HL_8CRE_065 HL_65794.5 | |
HL_6D90_111 | 1/5/4688:4702 | No text annotation | homologous HL_5TBW_067 NA | |
HL_6D90_112 | 1/5/4776:4859 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
HL_6D90_147 | 1/5/4903:4918 | No text annotation | ||
HL_6D90_113 | 1/5/4906:4915 | No text annotation | ||
HL_6D90_114 | 1/5/4975:4983 | No text annotation | homologous HL_8C3A_071 NA | |
HL_6D90_115 | 1/5/5021:5028 | Externally structured | geometric HL_8C3A_022 NA | |
HL_6D90_148 | 1/7/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
HL_6D90_116 | 1/7/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
HL_6D90_117 | 1/7/86:91 | GNRA | homologous HL_5TBW_186 NA | |
HL_6D90_166 | 1/8/46:57 | No text annotation | ||
HL_6D90_118 | 1/8/47:56 | Pseudoknot with intercalation | geometric HL_7A0S_001 HL_93438.2 | |
HL_6D90_119 | 1/8/68:90 | No text annotation | ||
HL_6D90_120 | 1/8/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
HL_6D90_121 | 1/8/121:129 | No text annotation | geometric HL_8KAL_003 HL_75660.5 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_6D90_123 | No text annotation | ||
HL_6D90_018 | No text annotation | ||
HL_6D90_125 | No text annotation | ||
HL_6D90_019 | No text annotation | ||
HL_6D90_026 | No text annotation | ||
HL_6D90_127 | No text annotation | ||
HL_6D90_128 | No text annotation | ||
HL_6D90_034 | No text annotation | ||
HL_6D90_037 | No text annotation | ||
HL_6D90_130 | No text annotation | ||
HL_6D90_043 | No text annotation | ||
HL_6D90_131 | No text annotation | ||
HL_6D90_132 | No text annotation | ||
HL_6D90_054 | GNRA with extra cWW | ||
HL_6D90_055 | No text annotation | ||
HL_6D90_134 | No text annotation | ||
HL_6D90_135 | No text annotation | ||
HL_6D90_059 | No text annotation | ||
HL_6D90_136 | No text annotation | ||
HL_6D90_137 | No text annotation | ||
HL_6D90_138 | No text annotation | ||
HL_6D90_077 | No text annotation | ||
HL_6D90_140 | GNRA with extra cWW | ||
HL_6D90_142 | tRNA anticodon loop | ||
HL_6D90_083 | No text annotation | ||
HL_6D90_090 | No text annotation | ||
HL_6D90_094 | No text annotation | ||
HL_6D90_144 | GNRA with extra cWW | ||
HL_6D90_107 | No text annotation | ||
HL_6D90_146 | No text annotation | ||
HL_6D90_110 | No text annotation | ||
HL_6D90_149 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_6D90_001 | 1/2/23:25, 1/2/649:651 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_87907.2 | |
IL_6D90_002 | 1/2/34:36, 1/2/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
IL_6D90_334 | 1/2/37:40, 1/2/514:518 | Double sheared | geometric IL_4WF9_016 IL_09705.15 | |
IL_6D90_004 | 1/2/41:47, 1/2/479:481 | No text annotation | geometric IL_4V88_387 NA | |
IL_6D90_005 | 1/2/49:51, 1/2/476:477 | Minor groove platform | homologous IL_4V88_388 NA | |
IL_6D90_006 | 1/2/57:62, 1/2/86:88 | No text annotation | homologous IL_4V88_389 NA | |
IL_6D90_335 | 1/2/63:68, 1/2/81:85 | No text annotation | homologous IL_8P9A_379 IL_21667.1 | |
IL_6D90_008 | 1/2/108:110, 1/2/351:353 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_87907.2 | |
IL_6D90_263 | 1/2/108:112, 1/2/349:353 | Partly complementary | geometric IL_7VYX_008 IL_49751.4 | |
IL_6D90_009 | 1/2/110:112, 1/2/349:351 | Isolated non-canonical cWW pair | geometric IL_5TBW_378 NA | |
IL_6D90_010 | 1/2/112:121, 1/2/343:349 | No text annotation | ||
IL_6D90_011 | 1/2/130:144, 1/2/175:182 | No text annotation | ||
IL_6D90_336 | 1/2/145:151, 1/2/167:174 | No text annotation | homologous IL_8CRE_400 IL_80604.6 | |
IL_6D90_013 | 1/2/152:154, 1/2/164:166 | Isolated non-canonical cWW contact | homologous IL_4V88_395 NA | |
IL_6D90_014 | 1/2/188:192, 1/2/207:211 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 IL_17948.2 | |
IL_6D90_015 | 1/2/216:219, 1/2/302:309 | Tandem non-canonical cWW pairs | geometric IL_1GID_008 NA | |
IL_6D90_016 | 1/2/223:288, 1/2/295:298 | No text annotation | ||
IL_6D90_267 | 1/2/312:314, 1/2/336:337 | Single bulged A | homologous IL_8P9A_388 IL_31462.7 | |
IL_6D90_018 | 1/2/317:319, 1/2/332:333 | No text annotation | ||
IL_6D90_019 | 1/2/359:364, 1/2/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
IL_6D90_020 | 1/2/366:371, 1/2/393:394 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
IL_6D90_021 | 1/2/411:413, 1/2/424:429 | No text annotation | homologous IL_4V88_404 NA | |
IL_6D90_022 | 1/2/437:439, 1/2/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
IL_6D90_023 | 1/2/459:461, 1/2/468:470 | Isolated near basepair | homologous IL_4V88_406 NA | |
IL_6D90_024 | 1/2/487:489, 1/2/511:512 | Single bulged U | geometric IL_4LFB_014 IL_89505.4 | |
IL_6D90_025 | 1/2/491:496, 1/2/506:509 | C-loop with extra cWW pair | homologous IL_4V88_408 NA | |
IL_6D90_026 | 1/2/529:530, 1/2/554:556 | Single bulged A | homologous IL_4V88_409 NA | |
IL_6D90_337 | 1/2/529:532, 1/2/552:556 | No text annotation | geometric IL_6XJQ_002 IL_48444.6 | |
IL_6D90_027 | 1/2/534:538, 1/2/545:550 | No text annotation | ||
IL_6D90_028 | 1/2/563:565, 1/2/585:592 | No text annotation | homologous IL_8C3A_420 NA | |
IL_6D90_029 | 1/2/566:569, 1/2/581:584 | tSH-tHW | geometric IL_5UNE_005 IL_85033.2 | |
IL_6D90_338 | 1/2/599:608, 1/2/635:637 | No text annotation | ||
IL_6D90_031 | 1/2/611:617, 1/2/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
IL_6D90_032 | 1/2/663:665, 1/2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
IL_6D90_033 | 1/2/665:671, 1/2/1161:1162 | No text annotation | homologous IL_4V88_416 NA | |
IL_6D90_034 | 1/2/673:675, 1/2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
IL_6D90_035 | 1/2/676:680, 1/2/1025:1029 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
IL_6D90_339 | 1/2/691:695, 1/2/731:735 | Partly complementary | geometric IL_8D29_010 IL_49751.4 | |
IL_6D90_036 | 1/2/692:695, 1/2/731:734 | Tandem non-canonical cWW pairs | geometric IL_4WF9_110 IL_51479.1 | |
IL_6D90_037 | 1/2/744:750, 1/2/793:797 | No text annotation | ||
IL_6D90_038 | 1/2/752:754, 1/2/790:791 | No text annotation | ||
IL_6D90_039 | 1/2/802:803, 1/2/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
IL_6D90_040 | 1/2/804:807, 1/2/856:859 | Tandem non-canonical cWW pairs | geometric IL_1JID_002 IL_85033.2 | |
IL_6D90_340 | 1/2/805:815, 1/2/849:858 | No text annotation | ||
IL_6D90_041 | 1/2/807:816, 1/2/848:856 | No text annotation | ||
IL_6D90_042 | 1/2/876:879, 1/2/907:910 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
IL_6D90_043 | 1/2/922:923, 1/2/1019:1022 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
IL_6D90_044 | 1/2/924:927, 1/2/1014:1018 | Tandem non-canonical cWW pairs | homologous IL_4V88_429 NA | |
IL_6D90_273 | 1/2/925:931, 1/2/1010:1017 | No text annotation | ||
IL_6D90_045 | 1/2/927:931, 1/2/1010:1014 | No text annotation | geometric IL_5TBW_121 NA | |
IL_6D90_046 | 1/2/931:935, 1/2/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
IL_6D90_341 | 1/2/942:945, 1/2/981:984 | Tandem non-canonical cWW pairs | homologous IL_8P9A_421 IL_85033.2 | |
IL_6D90_048 | 1/2/952:956, 1/2/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
IL_6D90_049 | 1/2/1042:1051, 1/2/1067:1073 | No text annotation | ||
IL_6D90_050 | 1/2/1091:1093, 1/2/1152:1158 | No text annotation | homologous IL_4V88_437 NA | |
IL_6D90_051 | 1/2/1098:1101, 1/2/1131:1134 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
IL_6D90_277 | 1/2/1098:1103, 1/2/1129:1134 | No text annotation | geometric IL_6O5F_001 NA | |
IL_6D90_052 | 1/2/1101:1103, 1/2/1129:1131 | Isolated non-canonical cWW pair | geometric IL_4WF9_083 IL_87907.2 | |
IL_6D90_053 | 1/2/1108:1110, 1/2/1123:1124 | Minor groove platform | geometric IL_4V88_412 NA | |
IL_6D90_054 | 1/2/1168:1175, 1/2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
IL_6D90_055 | 1/2/1203:1204, 1/2/1694:1696 | Single bulged A | homologous IL_4V88_441 NA | |
IL_6D90_056 | 1/2/1206:1208, 1/2/1691:1692 | Single bulged G | homologous IL_4V88_442 NA | |
IL_6D90_057 | 1/2/1214:1217, 1/2/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
IL_6D90_058 | 1/2/1230:1232, 1/2/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
IL_6D90_059 | 1/2/1235:1236, 1/2/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
IL_6D90_060 | 1/2/1270:1272, 1/2/1510:1512 | Isolated non-canonical cWW pair | homologous IL_4V88_446 NA | |
IL_6D90_061 | 1/2/1280:1287, 1/2/1314:1317 | No text annotation | ||
IL_6D90_342 | 1/2/1281:1290, 1/2/1309:1316 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
IL_6D90_062 | 1/2/1287:1290, 1/2/1309:1314 | No text annotation | ||
IL_6D90_063 | 1/2/1291:1294, 1/2/1305:1308 | No text annotation | ||
IL_6D90_064 | 1/2/1325:1327, 1/2/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
IL_6D90_065 | 1/2/1328:1333, 1/2/1498:1501 | Tandem non-canonical cWW pairs | geometric IL_4V88_473 NA | |
IL_6D90_343 | 1/2/1329:1335, 1/2/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
IL_6D90_066 | 1/2/1333:1335, 1/2/1492:1498 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
IL_6D90_067 | 1/2/1337:1338, 1/2/1488:1490 | Single bulged A | homologous IL_4V88_452 NA | |
IL_6D90_068 | 1/2/1347:1349, 1/2/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
IL_6D90_069 | 1/2/1363:1365, 1/2/1374:1375 | Minor groove platform | homologous IL_8C3A_460 NA | |
IL_6D90_070 | 1/2/1395:1399, 1/2/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_85033.2 | |
IL_6D90_071 | 1/2/1402:1406, 1/2/1440:1444 | No text annotation | ||
IL_6D90_072 | 1/2/1412:1413, 1/2/1427:1429 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
IL_6D90_284 | 1/2/1537:1539, 1/2/1594:1596 | Isolated non-canonical cWW pair | geometric IL_4X4N_005 IL_87907.2 | |
IL_6D90_285 | 1/2/1540:1550, 1/2/1582:1593 | No text annotation | ||
IL_6D90_074 | 1/2/1550:1558, 1/2/1577:1582 | 180 degree turn | geometric IL_5J7L_055 IL_11344.2 | |
IL_6D90_075 | 1/2/1560:1562, 1/2/1573:1575 | Isolated non-canonical cWW pair | geometric IL_4WF9_018 IL_07785.1 | |
IL_6D90_076 | 1/2/1604:1610, 1/2/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
IL_6D90_077 | 1/2/1700:1702, 1/2/1833:1836 | No text annotation | geometric IL_4V88_463 NA | |
IL_6D90_078 | 1/2/1702:1705, 1/2/1829:1833 | No text annotation | geometric IL_4V88_464 NA | |
IL_6D90_079 | 1/2/1705:1708, 1/2/1826:1829 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_85033.2 | |
IL_6D90_286 | 1/2/1705:1711, 1/2/1822:1829 | No text annotation | ||
IL_6D90_080 | 1/2/1708:1711, 1/2/1822:1826 | No text annotation | ||
IL_6D90_081 | 1/2/1714:1717, 1/2/1816:1819 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 IL_85033.2 | |
IL_6D90_082 | 1/2/1717:1720, 1/2/1813:1816 | Double sheared | homologous IL_4V88_468 NA | |
IL_6D90_083 | 1/2/1720:1722, 1/2/1812:1813 | Single bulged U | geometric IL_4V88_469 NA | |
IL_6D90_344 | 1/2/1729:1731, 1/2/1803:1805 | Isolated non-canonical cWW pair | homologous IL_8CRE_473 IL_07785.1 | |
IL_6D90_085 | 1/2/1733:1736, 1/2/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
IL_6D90_086 | 1/2/1739:1741, 1/2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_5Y85_006 IL_87907.2 | |
IL_6D90_345 | 1/2/1742:1746, 1/2/1788:1792 | Triple sheared | homologous IL_8CRE_476 IL_50730.2 | |
IL_6D90_346 | 1/2/1750:1752, 1/2/1780:1784 | No text annotation | ||
IL_6D90_089 | 1/3/46:48, 1/3/56:57 | Single stack bend | geometric IL_5TBW_035 NA | |
IL_6D90_090 | 1/4/6050:6053, 1/4/6073:6076 | No text annotation | ||
IL_6D90_091 | 1/4/6127:6129, 1/4/6157:6159 | No text annotation | ||
IL_6D90_289 | 1/4/6130:6139, 1/4/6149:6156 | No text annotation | ||
IL_6D90_092 | 1/4/6132:6139, 1/4/6149:6154 | No text annotation | ||
IL_6D90_347 | 1/4/6181:6183, 1/4/6194:6195 | No text annotation | ||
IL_6D90_094 | 1/5/6:7, 1/8/149:151 | Single bulged C | homologous IL_8C3A_002 NA | |
IL_6D90_095 | 1/5/12:14, 1/8/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
IL_6D90_096 | 1/5/16:18, 1/8/139:141 | Isolated non-canonical cWW pair | geometric IL_5ED2_004 NA | |
IL_6D90_097 | 1/5/26:27, 1/5/55:57 | Single stack bend | homologous IL_5TBW_004 NA | |
IL_6D90_098 | 1/5/30:37, 1/5/44:52 | No text annotation | homologous IL_8C3A_005 NA | |
IL_6D90_099 | 1/5/81:88, 1/5/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
IL_6D90_100 | 1/5/118:121, 1/5/152:153 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.5 | |
IL_6D90_292 | 1/5/118:122, 1/5/147:153 | No text annotation | ||
IL_6D90_101 | 1/5/121:122, 1/5/147:152 | No text annotation | homologous IL_8C3A_007 NA | |
IL_6D90_102 | 1/5/125:126, 1/5/142:144 | Single bulged C | geometric IL_1S03_006 IL_61258.15 | |
IL_6D90_103 | 1/5/168:173, 1/5/263:267 | No text annotation | ||
IL_6D90_104 | 1/5/180:189, 1/5/252:256 | No text annotation | ||
IL_6D90_105 | 1/5/195:196, 1/5/244:246 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
IL_6D90_106 | 1/5/199:201, 1/5/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
IL_6D90_107 | 1/5/339:342, 1/8/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
IL_6D90_108 | 1/5/348:350, 1/8/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
IL_6D90_109 | 1/5/387:390, 1/5/401:414 | No text annotation | geometric IL_5TBW_014 NA | |
IL_6D90_110 | 1/5/415:421, 1/8/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
IL_6D90_111 | 1/5/443:446, 1/5/1300:1304 | No text annotation | geometric IL_6AZ4_001 NA | |
IL_6D90_295 | 1/5/448:450, 1/5/1297:1298 | No text annotation | ||
IL_6D90_113 | 1/5/459:460, 1/5/695:697 | Single bulged C | geometric IL_1S03_006 IL_61258.15 | |
IL_6D90_114 | 1/5/462:464, 1/5/691:693 | Isolated non-canonical cWW pair | geometric IL_4J50_002 IL_87907.2 | |
IL_6D90_348 | 1/5/466:472, 1/5/682:689 | No text annotation | ||
IL_6D90_116 | 1/5/480:485, 1/5/671:674 | No text annotation | ||
IL_6D90_117 | 1/5/487:488, 1/5/665:669 | Multiple bulged bases | geometric IL_6JXM_001 IL_84476.1 | |
IL_6D90_118 | 1/5/491:493, 1/5/661:662 | No text annotation | ||
IL_6D90_119 | 1/5/497:499, 1/5/656:657 | Single bulged C | geometric IL_3W3S_001 IL_61258.15 | |
IL_6D90_349 | 1/5/508:510, 1/5/649:650 | Single bulged A | geometric IL_4R4V_003 IL_31462.7 | |
IL_6D90_121 | 1/5/709:710, 1/5/1286:1288 | No text annotation | ||
IL_6D90_122 | 1/5/723:724, 1/5/942:945 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
IL_6D90_123 | 1/5/727:731, 1/5/938:939 | No text annotation | ||
IL_6D90_124 | 1/5/732:735, 1/5/928:937 | No text annotation | ||
IL_6D90_125 | 1/5/737:740, 1/5/923:926 | No text annotation | ||
IL_6D90_300 | 1/5/737:743, 1/5/921:926 | No text annotation | ||
IL_6D90_126 | 1/5/740:743, 1/5/921:923 | No text annotation | ||
IL_6D90_301 | 1/5/745:752, 1/5/911:919 | No text annotation | geometric IL_8C3A_022 NA | |
IL_6D90_128 | 1/5/980:982, 1/5/1273:1275 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
IL_6D90_129 | 1/5/1074:1077, 1/5/1233:1236 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
IL_6D90_130 | 1/5/1077:1081, 1/5/1218:1233 | No text annotation | ||
IL_6D90_131 | 1/5/1082:1084, 1/5/1213:1217 | Isolated cWS basepair | geometric IL_4TS2_003 NA | |
IL_6D90_132 | 1/5/1086:1087, 1/5/1209:1211 | No text annotation | ||
IL_6D90_133 | 1/5/1097:1098, 1/5/1197:1199 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
IL_6D90_350 | 1/5/1100:1168, 1/5/1193:1195 | No text annotation | ||
IL_6D90_135 | 1/5/1173:1175, 1/5/1186:1188 | Isolated cWH basepair | geometric IL_3W3S_003 IL_10167.6 | |
IL_6D90_136 | 1/5/1357:1360, 1/5/1379:1382 | No text annotation | ||
IL_6D90_351 | 1/5/1357:1361, 1/5/1376:1382 | No text annotation | ||
IL_6D90_137 | 1/5/1360:1361, 1/5/1376:1379 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
IL_6D90_138 | 1/5/1425:1429, 1/5/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_97631.1 | |
IL_6D90_352 | 1/5/1431:1434, 1/5/1450:1453 | Double sheared | geometric IL_6YML_002 IL_09705.15 | |
IL_6D90_308 | 1/5/1467:1468, 1/5/1496:1498 | Single bulged A | homologous IL_8P9A_252 IL_31462.7 | |
IL_6D90_141 | 1/5/1474:1476, 1/5/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
IL_6D90_142 | 1/5/1520:1522, 1/5/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
IL_6D90_143 | 1/5/1522:1526, 1/5/1648:1655 | tHW-tHW cross-strand stack | homologous IL_5TBW_028 NA | |
IL_6D90_144 | 1/5/1550:1551, 1/5/1576:1578 | Single bulged G | homologous IL_8C3A_032 NA | |
IL_6D90_309 | 1/5/1550:1555, 1/5/1572:1578 | No text annotation | geometric IL_4V88_462 NA | |
IL_6D90_145 | 1/5/1551:1555, 1/5/1572:1576 | Triple sheared | geometric IL_5TBW_030 NA | |
IL_6D90_146 | 1/5/1586:1589, 1/5/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
IL_6D90_147 | 1/5/1590:1592, 1/5/1603:1604 | Single bulged U | homologous IL_5TBW_032 NA | |
IL_6D90_148 | 1/5/1624:1626, 1/5/1636:1640 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
IL_6D90_149 | 1/5/1671:1673, 1/5/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
IL_6D90_150 | 1/5/1685:1688, 1/5/1848:1852 | No text annotation | ||
IL_6D90_151 | 1/5/1694:1722, 1/5/1840:1842 | No text annotation | ||
IL_6D90_152 | 1/5/1723:1725, 1/5/1838:1839 | Single bulged G | homologous IL_8C3A_040 NA | |
IL_6D90_153 | 1/5/1732:1738, 1/5/1790:1797 | No text annotation | ||
IL_6D90_154 | 1/5/1739:1745, 1/5/1785:1789 | No text annotation | geometric IL_4V9F_035 IL_06691.1 | |
IL_6D90_310 | 1/5/1739:1749, 1/5/1781:1789 | No text annotation | ||
IL_6D90_155 | 1/5/1746:1749, 1/5/1781:1784 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
IL_6D90_156 | 1/5/1749:1751, 1/5/1779:1781 | Isolated non-canonical cWW pair | geometric IL_4LFB_059 IL_87907.2 | |
IL_6D90_353 | 1/5/1753:1756, 1/5/1776:1777 | No text annotation | ||
IL_6D90_354 | 1/5/1858:1860, 1/5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_87907.2 | |
IL_6D90_160 | 1/5/1905:1909, 1/5/2067:2071 | UAA/GAN | homologous IL_5TBW_048 NA | |
IL_6D90_161 | 1/5/1911:1918, 1/5/2064:2065 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
IL_6D90_311 | 1/5/1911:1920, 1/5/2063:2065 | No text annotation | ||
IL_6D90_162 | 1/5/1918:1920, 1/5/2063:2064 | No text annotation | ||
IL_6D90_163 | 1/5/1920:1922, 1/5/2062:2063 | No text annotation | ||
IL_6D90_164 | 1/5/1926:1933, 1/5/2053:2058 | No text annotation | geometric IL_5TBW_051 NA | |
IL_6D90_165 | 1/5/1933:1944, 1/5/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
IL_6D90_312 | 1/5/1945:1948, 1/5/2035:2037 | Isolated non-canonical cWW pair | geometric IL_1U6B_001 IL_57744.1 | |
IL_6D90_166 | 1/5/1946:1948, 1/5/2035:2036 | Single bulged U | homologous IL_5TBW_053 NA | |
IL_6D90_355 | 1/5/1957:1965, 1/5/2022:2026 | Kink-turn | homologous IL_8CRE_057 IL_99692.2 | |
IL_6D90_356 | 1/5/1969:1972, 1/5/1994:2018 | No text annotation | ||
IL_6D90_168 | 1/5/1973:1978, 1/5/1988:1993 | No text annotation | ||
IL_6D90_169 | 1/5/2001:2005, 1/5/2014:2016 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_51387.3 | |
IL_6D90_357 | 1/5/2083:2085, 1/5/2272:2273 | Single bulged U | geometric IL_4LFB_046 IL_89505.4 | |
IL_6D90_171 | 1/5/2290:2292, 1/5/2342:2345 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
IL_6D90_172 | 1/5/2299:2301, 1/5/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
IL_6D90_173 | 1/5/2302:2309, 1/5/2329:2333 | Kink-turn | homologous IL_5TBW_059 NA | |
IL_6D90_174 | 1/5/2312:2314, 1/5/2325:2326 | Single bulged A | homologous IL_5TBW_060 NA | |
IL_6D90_175 | 1/5/2358:2364, 1/5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
IL_6D90_176 | 1/5/2415:2419, 1/5/2427:2429 | C-loop | geometric IL_7A0S_047 IL_83150.2 | |
IL_6D90_177 | 1/5/2446:2450, 1/5/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
IL_6D90_358 | 1/5/2477:2479, 1/5/2499:2500 | Single stack bend | geometric IL_9DFE_057 IL_26793.1 | |
IL_6D90_179 | 1/5/2541:2547, 1/5/2772:2775 | Tandem non-canonical cWW pairs | geometric IL_5J7L_033 IL_85033.2 | |
IL_6D90_180 | 1/5/2549:2550, 1/5/2768:2770 | Single bulged U | geometric IL_2A64_002 IL_89505.4 | |
IL_6D90_181 | 1/5/2589:2593, 1/5/2752:2756 | Triple sheared | homologous IL_5TBW_067 NA | |
IL_6D90_182 | 1/5/2613:2614, 1/5/2724:2726 | Single bulged A | geometric IL_3MJA_001 NA | |
IL_6D90_183 | 1/5/2614:2615, 1/5/2722:2724 | Single stack bend | homologous IL_5TBW_070 NA | |
IL_6D90_184 | 1/5/2646:2648, 1/5/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_85599.2 | |
IL_6D90_185 | 1/5/2651:2653, 1/5/2681:2682 | Single bulged G | geometric IL_3NDB_004 IL_00225.14 | |
IL_6D90_186 | 1/5/2656:2662, 1/5/2672:2678 | Kink-turn | homologous IL_5TBW_073 NA | |
IL_6D90_187 | 1/5/2704:2705, 1/5/2710:2712 | No text annotation | ||
IL_6D90_188 | 1/5/2832:2838, 1/5/3850:3853 | No text annotation | homologous IL_8C3A_080 NA | |
IL_6D90_189 | 1/5/2844:2846, 1/5/3842:3844 | No text annotation | homologous IL_8C3A_081 NA | |
IL_6D90_190 | 1/5/2847:2850, 1/5/3840:3841 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
IL_6D90_316 | 1/5/2847:2855, 1/5/3837:3841 | No text annotation | homologous IL_8P9A_305 IL_22854.4 | |
IL_6D90_191 | 1/5/2850:2855, 1/5/3837:3840 | No text annotation | homologous IL_8C3A_083 NA | |
IL_6D90_192 | 1/5/2867:2872, 1/5/2877:2883 | tSH-tSH-tHH-tHS | homologous IL_5TBW_078 NA | |
IL_6D90_193 | 1/5/2889:2891, 1/5/3610:3612 | Isolated non-canonical cWW pair | homologous IL_5TBW_079 NA | |
IL_6D90_194 | 1/5/2896:2897, 1/5/3602:3605 | No text annotation | homologous IL_8C3A_086 NA | |
IL_6D90_195 | 1/5/3632:3633, 1/5/3827:3829 | Single bulged A | homologous IL_8C3A_087 NA | |
IL_6D90_196 | 1/5/3659:3665, 1/5/3677:3685 | No text annotation | ||
IL_6D90_197 | 1/5/3700:3703, 1/5/3749:3750 | Major groove intercalation | homologous IL_5TBW_084 NA | |
IL_6D90_359 | 1/5/3704:3705, 1/5/3745:3748 | No text annotation | homologous IL_8CRE_090 IL_82107.5 | |
IL_6D90_199 | 1/5/3707:3710, 1/5/3741:3743 | No text annotation | ||
IL_6D90_360 | 1/5/3708:3714, 1/5/3739:3742 | No text annotation | ||
IL_6D90_200 | 1/5/3710:3714, 1/5/3739:3741 | No text annotation | ||
IL_6D90_201 | 1/5/3714:3720, 1/5/3734:3739 | No text annotation | ||
IL_6D90_361 | 1/5/3715:3721, 1/5/3732:3738 | No text annotation | homologous IL_8CRE_093 IL_88116.2 | |
IL_6D90_202 | 1/5/3720:3721, 1/5/3732:3734 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
IL_6D90_203 | 1/5/3780:3781, 1/5/3811:3814 | No text annotation | homologous IL_8C3A_094 NA | |
IL_6D90_204 | 1/5/3781:3794, 1/5/3806:3811 | No text annotation | ||
IL_6D90_205 | 1/5/3895:3898, 1/5/4563:4565 | No text annotation | homologous IL_8C3A_096 NA | |
IL_6D90_206 | 1/5/3900:3902, 1/5/4558:4561 | No text annotation | homologous IL_8C3A_097 NA | |
IL_6D90_207 | 1/5/3913:3915, 1/5/4388:4389 | Single bulged U | homologous IL_5TBW_093 NA | |
IL_6D90_208 | 1/5/3916:3917, 1/5/4384:4387 | Minor groove platform | homologous IL_5TBW_094 NA | |
IL_6D90_362 | 1/5/3927:3929, 1/5/4181:4184 | No text annotation | homologous IL_8CRE_100 IL_85599.2 | |
IL_6D90_210 | 1/5/3948:3949, 1/5/4063:4065 | No text annotation | ||
IL_6D90_211 | 1/5/3949:3952, 1/5/4060:4063 | Tandem non-canonical cWW pairs | geometric IL_5LQO_002 IL_85033.2 | |
IL_6D90_323 | 1/5/3954:3967, 1/5/4054:4058 | No text annotation | ||
IL_6D90_363 | 1/5/3969:3973, 1/5/4038:4052 | No text annotation | ||
IL_6D90_213 | 1/5/3970:3973, 1/5/4038:4051 | No text annotation | ||
IL_6D90_214 | 1/5/4082:4088, 1/5/4161:4164 | No text annotation | homologous IL_5TBW_096 NA | |
IL_6D90_364 | 1/5/4095:4100, 1/5/4108:4113 | No text annotation | geometric IL_3IGI_015 IL_82292.1 | |
IL_6D90_216 | 1/5/4191:4192, 1/5/4202:4204 | Single bulged A | homologous IL_5TBW_098 NA | |
IL_6D90_217 | 1/5/4243:4245, 1/5/4263:4267 | No text annotation | homologous IL_8C3A_108 NA | |
IL_6D90_365 | 1/5/4291:4293, 1/5/4317:4318 | Single bulged A | geometric IL_7MKY_001 IL_31462.7 | |
IL_6D90_219 | 1/5/4295:4298, 1/5/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
IL_6D90_220 | 1/5/4347:4350, 1/5/4364:4365 | Single stack bend | geometric IL_5TBW_101 NA | |
IL_6D90_221 | 1/5/4400:4401, 1/5/4442:4444 | Major groove platform | geometric IL_7A0S_073 IL_48076.6 | |
IL_6D90_222 | 1/5/4401:4403, 1/5/4440:4442 | Isolated non-canonical cWW pair | homologous IL_5TBW_103 NA | |
IL_6D90_223 | 1/5/4403:4405, 1/5/4439:4440 | Major groove platform | geometric IL_5TBW_104 NA | |
IL_6D90_326 | 1/5/4403:4407, 1/5/4435:4440 | No text annotation | ||
IL_6D90_224 | 1/5/4405:4407, 1/5/4435:4439 | Major groove minor groove platform with extra cWW | homologous IL_5TBW_105 NA | |
IL_6D90_225 | 1/5/4412:4416, 1/5/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
IL_6D90_226 | 1/5/4453:4454, 1/5/4526:4528 | Major groove platform | homologous IL_5TBW_107 NA | |
IL_6D90_227 | 1/5/4456:4458, 1/5/4520:4524 | Isolated non-canonical cWW with bulges | homologous IL_5TBW_108 NA | |
IL_6D90_228 | 1/5/4458:4459, 1/5/4517:4520 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
IL_6D90_366 | 1/5/4466:4470, 1/5/4485:4491 | No text annotation | ||
IL_6D90_367 | 1/5/4537:4538, 1/5/4547:4549 | No text annotation | ||
IL_6D90_231 | 1/5/4580:4582, 1/5/4721:4723 | Isolated cWH basepair | geometric IL_3CZW_001 IL_10167.6 | |
IL_6D90_232 | 1/5/4582:4585, 1/5/4717:4721 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
IL_6D90_233 | 1/5/4590:4592, 1/5/4618:4620 | Isolated non-canonical cWW pair | homologous IL_5TBW_115 NA | |
IL_6D90_234 | 1/5/4596:4603, 1/5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_116 NA | |
IL_6D90_235 | 1/5/4624:4629, 1/5/4669:4673 | No text annotation | ||
IL_6D90_236 | 1/5/4632:4637, 1/5/4662:4666 | UAA/GAN related | homologous IL_5TBW_118 NA | |
IL_6D90_237 | 1/5/4638:4640, 1/5/4659:4661 | Isolated non-canonical cWW pair | geometric IL_1YZ9_001 NA | |
IL_6D90_238 | 1/5/4641:4642, 1/5/4655:4658 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
IL_6D90_239 | 1/5/4680:4685, 1/5/4705:4710 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
IL_6D90_240 | 1/5/4737:4743, 1/5/4957:4962 | No text annotation | ||
IL_6D90_368 | 1/5/4738:4746, 1/5/4954:4961 | No text annotation | ||
IL_6D90_241 | 1/5/4743:4746, 1/5/4954:4957 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
IL_6D90_242 | 1/5/4756:4766, 1/5/4868:4877 | No text annotation | ||
IL_6D90_243 | 1/5/4769:4773, 1/5/4862:4865 | No text annotation | ||
IL_6D90_244 | 1/5/4885:4888, 1/5/4931:4934 | Tandem non-canonical cWW pairs | geometric IL_4K27_003 IL_77658.1 | |
IL_6D90_245 | 1/5/4890:4896, 1/5/4924:4929 | No text annotation | ||
IL_6D90_369 | 1/5/4890:4899, 1/5/4920:4929 | No text annotation | ||
IL_6D90_246 | 1/5/4896:4899, 1/5/4920:4924 | No text annotation | geometric IL_6AZ4_001 NA | |
IL_6D90_247 | 1/5/4992:4994, 1/5/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_87907.2 | |
IL_6D90_248 | 1/5/4996:4997, 1/5/5053:5055 | No text annotation | ||
IL_6D90_330 | 1/5/5000:5002, 1/5/5045:5050 | No text annotation | homologous IL_8P9A_359 IL_43622.1 | |
IL_6D90_250 | 1/5/5003:5009, 1/5/5039:5044 | No text annotation | ||
IL_6D90_251 | 1/5/5012:5014, 1/5/5035:5036 | Single bulged C | geometric IL_1S03_006 IL_61258.15 | |
IL_6D90_252 | 1/5/5014:5017, 1/5/5032:5035 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
IL_6D90_253 | 1/7/15:16, 1/7/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
IL_6D90_254 | 1/7/21:27, 1/7/52:57 | Minor groove platform related | geometric IL_5TBW_373 NA | |
IL_6D90_370 | 1/7/21:29, 1/7/48:57 | No text annotation | ||
IL_6D90_255 | 1/7/27:29, 1/7/48:52 | No text annotation | ||
IL_6D90_256 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
IL_6D90_257 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
IL_6D90_258 | 1/7/79:81, 1/7/95:97 | Isolated non-canonical cWW pair | geometric IL_4E48_004 IL_87907.2 | |
IL_6D90_259 | 1/7/82:85, 1/7/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
IL_6D90_260 | 1/8/64:67, 1/8/91:95 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_6D90_261 | Tandem non-canonical cWW pairs | ||
IL_6D90_003 | Triple sheared related | ||
IL_6D90_262 | No text annotation | ||
IL_6D90_007 | No text annotation | ||
IL_6D90_012 | No text annotation | ||
IL_6D90_264 | No text annotation | ||
IL_6D90_265 | No text annotation | ||
IL_6D90_266 | No text annotation | ||
IL_6D90_017 | Isolated non-canonical cWW pair | ||
IL_6D90_268 | Tandem non-canonical cWW pairs | ||
IL_6D90_269 | Partly complementary | ||
IL_6D90_030 | No text annotation | ||
IL_6D90_270 | No text annotation | ||
IL_6D90_271 | No text annotation | ||
IL_6D90_272 | No text annotation | ||
IL_6D90_274 | Triple non-canonical cWW pairs | ||
IL_6D90_047 | No text annotation | ||
IL_6D90_275 | Kink-turn | ||
IL_6D90_276 | No text annotation | ||
IL_6D90_278 | Isolated non-canonical cWW with bulges | ||
IL_6D90_279 | Isolated non-canonical cWW pair | ||
IL_6D90_280 | No text annotation | ||
IL_6D90_281 | No text annotation | ||
IL_6D90_282 | No text annotation | ||
IL_6D90_283 | No text annotation | ||
IL_6D90_073 | Tandem non-canonical cWW pairs | ||
IL_6D90_084 | tSH-tHW | ||
IL_6D90_287 | No text annotation | ||
IL_6D90_087 | No text annotation | ||
IL_6D90_088 | No text annotation | ||
IL_6D90_288 | No text annotation | ||
IL_6D90_093 | No text annotation | ||
IL_6D90_290 | Tandem non-canonical cWW pairs | ||
IL_6D90_291 | No text annotation | ||
IL_6D90_293 | No text annotation | ||
IL_6D90_294 | No text annotation | ||
IL_6D90_112 | Isolated non-canonical cWW pair | ||
IL_6D90_296 | Partly complementary | ||
IL_6D90_115 | No text annotation | ||
IL_6D90_297 | No text annotation | ||
IL_6D90_298 | Isolated non-canonical cWW contact | ||
IL_6D90_299 | Isolated non-canonical cWW pair | ||
IL_6D90_120 | No text annotation | ||
IL_6D90_127 | No text annotation | ||
IL_6D90_302 | Isolated non-canonical cWW pair | ||
IL_6D90_303 | No text annotation | ||
IL_6D90_134 | No text annotation | ||
IL_6D90_304 | Tandem non-canonical cWW pairs | ||
IL_6D90_305 | No text annotation | ||
IL_6D90_306 | No text annotation | ||
IL_6D90_307 | Double sheared; A in syn; two near cWW pairs | ||
IL_6D90_139 | Double sheared with non-canonical cWW | ||
IL_6D90_140 | Isolated non-canonical cWW pair | ||
IL_6D90_157 | No text annotation | ||
IL_6D90_158 | Tandem non-canonical cWW pairs | ||
IL_6D90_159 | Isolated cWS basepair | ||
IL_6D90_313 | No text annotation | ||
IL_6D90_167 | No text annotation | ||
IL_6D90_314 | No text annotation | ||
IL_6D90_170 | Isolated non-canonical cWW pair | ||
IL_6D90_315 | Tandem non-canonical cWW pairs | ||
IL_6D90_178 | No text annotation | ||
IL_6D90_317 | No text annotation | ||
IL_6D90_318 | Isolated non-canonical cWW pair | ||
IL_6D90_198 | No text annotation | ||
IL_6D90_319 | No text annotation | ||
IL_6D90_320 | No text annotation | ||
IL_6D90_321 | No text annotation | ||
IL_6D90_322 | No text annotation | ||
IL_6D90_209 | No text annotation | ||
IL_6D90_212 | No text annotation | ||
IL_6D90_324 | No text annotation | ||
IL_6D90_325 | No text annotation | ||
IL_6D90_215 | No text annotation | ||
IL_6D90_218 | Isolated non-canonical cWW pair | ||
IL_6D90_229 | No text annotation | ||
IL_6D90_230 | Other IL | ||
IL_6D90_327 | No text annotation | ||
IL_6D90_328 | No text annotation | ||
IL_6D90_329 | No text annotation | ||
IL_6D90_249 | No text annotation | ||
IL_6D90_331 | No text annotation | ||
IL_6D90_332 | 9x8 Sarcin-Ricin; G-bulge | ||
IL_6D90_333 | Tandem non-canonical cWW pairs |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_6D90_001 | 1/2/40:41, 1/2/481:487, 1/2/512:514 | No text annotation | geometric J3_4V88_078 NA | |
J3_6D90_029 | 1/2/40:47, 1/2/479:487, 1/2/512:514 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
J3_6D90_002 | 1/2/816:819, 1/2/829:831, 1/2/843:848 | No text annotation | homologous J3_4V88_032 NA | |
J3_6D90_003 | 1/2/938:941, 1/2/985:993, 1/2/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
J3_6D90_004 | 1/2/1094:1096, 1/2/1136:1140, 1/2/1147:1151 | No text annotation | ||
J3_6D90_005 | 1/2/1218:1221, 1/2/1645:1651, 1/2/1673:1680 | No text annotation | homologous J3_4V88_035 NA | |
J3_6D90_048 | 1/2/1225:1228, 1/2/1530:1532, 1/2/1638:1641 | No text annotation | homologous J3_8P9A_077 J3_52655.4 | |
J3_6D90_007 | 1/2/1237:1244, 1/2/1255:1266, 1/2/1516:1520 | No text annotation | geometric J3_4V88_037 NA | |
J3_6D90_031 | 1/2/1237:1244, 1/2/1255:1268, 1/2/1514:1520 | No text annotation | ||
J3_6D90_032 | 1/2/1270:1277, 1/2/1320:1324, 1/2/1504:1512 | No text annotation | ||
J3_6D90_008 | 1/2/1272:1277, 1/2/1320:1324, 1/2/1504:1510 | No text annotation | homologous J3_8C3A_041 NA | |
J3_6D90_033 | 1/2/1340:1345, 1/2/1384:1389, 1/2/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_99563.1 | |
J3_6D90_010 | 1/2/1350:1351, 1/2/1360:1363, 1/2/1375:1379 | No text annotation | geometric J3_8C3A_085 NA | |
J3_6D90_035 | 1/2/1391:1395, 1/2/1450:1456, 1/2/1470:1479 | No text annotation | ||
J3_6D90_011 | 1/2/1532:1536, 1/2/1597:1604, 1/2/1635:1638 | No text annotation | homologous J3_4V88_041 NA | |
J3_6D90_012 | 1/5/112:116, 1/5/155:160, 1/5/275:278 | No text annotation | ||
J3_6D90_036 | 1/5/351:367, 1/5/374:379, 1/8/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
J3_6D90_013 | 1/5/380:387, 1/5/414:415, 1/8/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
J3_6D90_037 | 1/5/380:390, 1/5/401:415, 1/8/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
J3_6D90_038 | 1/5/451:456, 1/5/700:705, 1/5/1292:1296 | No text annotation | ||
J3_6D90_014 | 1/5/982:984, 1/5/1070:1074, 1/5/1236:1273 | No text annotation | ||
J3_6D90_015 | 1/5/1531:1537, 1/5/1622:1624, 1/5/1640:1643 | No text annotation | homologous J3_5TBW_004 NA | |
J3_6D90_016 | 1/5/1545:1548, 1/5/1580:1584, 1/5/1609:1614 | No text annotation | homologous J3_5TBW_005 NA | |
J3_6D90_049 | 1/5/1726:1727, 1/5/1802:1806, 1/5/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_09667.1 | |
J3_6D90_017 | 1/5/1969:1973, 1/5/1993:2001, 1/5/2016:2018 | No text annotation | ||
J3_6D90_018 | 1/5/2393:2399, 1/5/2805:2807, 1/5/2819:2822 | No text annotation | homologous J3_8C3A_006 NA | |
J3_6D90_019 | 1/5/2402:2405, 1/5/2785:2791, 1/5/2800:2802 | No text annotation | homologous J3_8C3A_007 NA | |
J3_6D90_020 | 1/5/2440:2445, 1/5/2515:2519, 1/5/2536:2537 | No text annotation | homologous J3_5TBW_010 NA | |
J3_6D90_050 | 1/5/2451:2456, 1/5/2465:2476, 1/5/2501:2508 | No text annotation | ||
J3_6D90_021 | 1/5/2551:2555, 1/5/2572:2575, 1/5/2757:2767 | No text annotation | ||
J3_6D90_022 | 1/5/2575:2576, 1/5/2585:2589, 1/5/2756:2757 | No text annotation | homologous J3_8C3A_054 NA | |
J3_6D90_041 | 1/5/2598:2602, 1/5/2737:2738, 1/5/2742:2747 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
J3_6D90_051 | 1/5/3937:3939, 1/5/4074:4078, 1/5/4168:4173 | Kink-turn 3-way junction | geometric J3_5J7L_044 J3_89368.5 | |
J3_6D90_052 | 1/5/4091:4094, 1/5/4114:4130, 1/5/4154:4158 | No text annotation | ||
J3_6D90_043 | 1/5/4228:4230, 1/5/4331:4342, 1/5/4370:4375 | No text annotation | homologous J3_8P9A_061 J3_20992.1 | |
J3_6D90_053 | 1/5/4241:4243, 1/5/4267:4269, 1/5/4278:4283 | No text annotation | homologous J3_8P9A_062 J3_61124.2 | |
J3_6D90_025 | 1/5/4463:4466, 1/5/4491:4494, 1/5/4506:4513 | No text annotation | geometric J3_4V9F_009 J3_69441.1 | |
J3_6D90_044 | 1/5/4749:4754, 1/5/4879:4884, 1/5/4935:4951 | No text annotation | ||
J3_6D90_026 | 1/5/4970:4975, 1/5/4983:4991, 1/5/5060:5063 | No text annotation | ||
J3_6D90_046 | 1/7/9:14, 1/7/65:66, 1/7/109:110 | No text annotation | homologous J3_8P9A_066 J3_12003.2 | |
J3_6D90_028 | 1/8/44:45, 1/8/58:64, 1/8/95:99 | No text annotation | ||
J3_6D90_054 | 1/8/44:45, 1/8/58:66, 1/8/92:99 | No text annotation | ||
J4_6D90_001 | 1/2/98:106, 1/2/355:357, 1/2/405:409, 1/2/431:432 | No text annotation | homologous J4_8C3A_021 NA | |
J4_6D90_002 | 1/2/671:673, 1/2/1032:1037, 1/2/1078:1089, 1/2/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
J4_6D90_003 | 1/5/196:199, 1/5/215:222, 1/5/226:228, 1/5/240:244 | No text annotation | ||
J4_6D90_014 | 1/5/709:713, 1/5/955:984, 1/5/1070:1076, 1/5/1234:1288 | No text annotation | ||
J4_6D90_015 | 1/5/2365:2371, 1/5/2389:2391, 1/5/2824:2829, 1/5/3856:3857 | No text annotation | ||
J4_6D90_016 | 1/5/2406:2410, 1/5/2434:2439, 1/5/2538:2547, 1/5/2772:2784 | No text annotation | ||
J4_6D90_017 | 1/5/2551:2555, 1/5/2572:2576, 1/5/2585:2593, 1/5/2752:2767 | No text annotation | ||
J4_6D90_018 | 1/5/2618:2619, 1/5/2637:2642, 1/5/2692:2698, 1/5/2718:2719 | No text annotation | ||
J4_6D90_009 | 1/5/2855:2863, 1/5/2887:2888, 1/5/3613:3626, 1/5/3835:3837 | No text annotation | ||
J4_6D90_010 | 1/5/3634:3638, 1/5/3650:3654, 1/5/3690:3694, 1/5/3821:3826 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
J4_6D90_019 | 1/5/3696:3698, 1/5/3752:3753, 1/5/3771:3792, 1/5/3808:3819 | No text annotation | ||
J4_6D90_012 | 1/5/4231:4235, 1/5/4289:4291, 1/5/4318:4319, 1/5/4328:4330 | No text annotation | ||
J4_6D90_020 | 1/5/4587:4590, 1/5/4620:4621, 1/5/4676:4678, 1/5/4712:4715 | No text annotation | ||
J5_6D90_014 | 1/2/30:34, 1/2/521:527, 1/2/558:563, 1/2/592:595, 1/2/641:644 | No text annotation | homologous J5_8CRE_018 J5_80702.1 | |
J5_6D90_015 | 1/2/30:34, 1/2/521:527, 1/2/558:565, 1/2/585:595, 1/2/641:644 | No text annotation | ||
J5_6D90_016 | 1/2/53:56, 1/2/89:96, 1/2/434:436, 1/2/457:461, 1/2/468:474 | No text annotation | ||
J5_6D90_017 | 1/2/123:129, 1/2/183:185, 1/2/214:215, 1/2/310:312, 1/2/337:341 | No text annotation | ||
J5_6D90_018 | 1/3/7:10, 1/3/26:28, 1/3/44:46, 1/3/57:60, 1/3/76:77 | No text annotation | homologous J5_3ZGZ_001 J5_20390.2 | |
J5_6D90_008 | 1/5/19:21, 1/8/35:42, 1/8/101:106, 1/8/113:114, 1/8/136:138 | No text annotation | homologous J5_8C3A_001 NA | |
J5_6D90_019 | 1/5/111:116, 1/5/155:160, 1/5/275:283, 1/5/304:310, 1/5/327:330 | No text annotation | ||
J5_6D90_020 | 1/5/1335:1340, 1/5/1516:1519, 1/5/1658:1661, 1/5/2288:2290, 1/5/2345:2351 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
J5_6D90_011 | 1/5/2406:2410, 1/5/2434:2445, 1/5/2515:2519, 1/5/2536:2547, 1/5/2772:2784 | No text annotation | ||
J5_6D90_021 | 1/5/3903:3910, 1/5/4392:4400, 1/5/4444:4453, 1/5/4528:4534, 1/5/4552:4557 | No text annotation | ||
J5_6D90_022 | 1/5/3920:3923, 1/5/4188:4191, 1/5/4204:4205, 1/5/4227:4228, 1/5/4375:4381 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
J6_6D90_006 | 1/2/682:690, 1/2/736:749, 1/2/794:800, 1/2/865:879, 1/2/907:922, 1/2/1022:1023 | No text annotation | ||
J6_6D90_007 | 1/2/682:690, 1/2/736:749, 1/2/794:800, 1/2/865:879, 1/2/907:923, 1/2/1019:1023 | No text annotation | ||
J6_6D90_003 | 1/5/21:26, 1/5/57:67, 1/5/74:78, 1/5/105:109, 1/5/332:342, 1/8/32:35 | No text annotation | ||
J6_6D90_004 | 1/5/1352:1355, 1/5/1384:1388, 1/5/1395:1399, 1/5/1418:1421, 1/5/1464:1466, 1/5/1499:1504 | No text annotation | ||
J6_6D90_008 | 1/5/3920:3923, 1/5/4188:4191, 1/5/4204:4205, 1/5/4227:4230, 1/5/4331:4342, 1/5/4370:4381 | No text annotation | ||
J6_6D90_005 | 1/5/3920:3924, 1/5/4187:4191, 1/5/4204:4205, 1/5/4227:4230, 1/5/4331:4342, 1/5/4370:4381 | No text annotation | ||
J7_6D90_002 | 1/5/1666:1671, 1/5/1684:1685, 1/5/1852:1855, 1/5/1879:1884, 1/5/1895:1900, 1/5/2076:2078, 1/5/2278:2283 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_6D90_030 | No text annotation | ||
J3_6D90_006 | No text annotation | ||
J3_6D90_009 | No text annotation | ||
J3_6D90_034 | No text annotation | ||
J3_6D90_039 | No text annotation | ||
J3_6D90_040 | No text annotation | ||
J3_6D90_023 | No text annotation | ||
J3_6D90_042 | No text annotation | ||
J3_6D90_024 | No text annotation | ||
J3_6D90_045 | No text annotation | ||
J3_6D90_027 | No text annotation | ||
J3_6D90_047 | No text annotation | ||
J4_6D90_004 | No text annotation | ||
J4_6D90_005 | No text annotation | ||
J4_6D90_006 | No text annotation | ||
J4_6D90_007 | No text annotation | ||
J4_6D90_008 | No text annotation | ||
J4_6D90_011 | No text annotation | ||
J4_6D90_013 | No text annotation | ||
J5_6D90_001 | No text annotation | ||
J5_6D90_002 | No text annotation | ||
J5_6D90_003 | No text annotation | ||
J5_6D90_004 | No text annotation | ||
J5_6D90_005 | No text annotation | ||
J5_6D90_006 | No text annotation | ||
J5_6D90_007 | No text annotation | ||
J5_6D90_009 | No text annotation | ||
J5_6D90_010 | No text annotation | ||
J5_6D90_012 | No text annotation | ||
J5_6D90_013 | No text annotation | ||
J6_6D90_001 | No text annotation | ||
J6_6D90_002 | No text annotation | ||
J7_6D90_001 | No text annotation |
Coloring options: