HL_6D90_013

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D90_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1662

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6D90|1|2|A|569
6D90|1|2|C|570
6D90|1|2|U|571
6D90|1|2|U|572
6D90|1|2|U|573
6D90|1|2|A|574
6D90|1|2|A|575
6D90|1|2|A|576
6D90|1|2|U|577
6D90|1|2|C|578
6D90|1|2|C|579
6D90|1|2|U|580
6D90|1|2|U|581

Current chains

Chain 2

18S rRNA

Nearby chains

Chain KK

uS4

Chain ZZ

eS24