HL_6D90_040

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UACAAUUUUGAGAGGUUAAUA

Length

21 nucleotides

Bulged bases

6D90|1|4|A|6054, 6D90|1|4|G|6062, 6D90|1|4|G|6064, 6D90|1|4|A|6065

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|4|U|6053
6D90|1|4|A|6054
6D90|1|4|C|6055
6D90|1|4|A|6056
6D90|1|4|A|6057
6D90|1|4|U|6058
6D90|1|4|U|6059
6D90|1|4|U|6060
6D90|1|4|U|6061
6D90|1|4|G|6062
6D90|1|4|A|6063
6D90|1|4|G|6064
6D90|1|4|A|6065
6D90|1|4|G|6066
6D90|1|4|G|6067
6D90|1|4|U|6068
6D90|1|4|U|6069
6D90|1|4|A|6070
6D90|1|4|A|6071
6D90|1|4|U|6072
6D90|1|4|A|6073

Current chains

Chain 4

CrPV-IRES

Nearby chains

Chain GG

uS7