HL_6D90_041

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUUUA

Length

6 nucleotides

Bulged bases

6D90|1|4|U|6112, 6D90|1|4|U|6113

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D90_041 not in the Motif Atlas

Geometric match to HL_4WF9_071

Geometric discrepancy: 0.3844

The information below is about HL_4WF9_071

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6D90|1|4|U|6110
6D90|1|4|A|6111
6D90|1|4|U|6112
6D90|1|4|U|6113
6D90|1|4|U|6114
6D90|1|4|A|6115

Current chains

Chain 4

CrPV-IRES

Nearby chains