3D structure

PDB id
6D90 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UCUGAUCG
Length
8 nucleotides
Bulged bases
6D90|1|5|C|210
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6D90_048 not in the Motif Atlas
Homologous match to HL_5TBW_005
Geometric discrepancy: 0.3602
The information below is about HL_5TBW_005
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_58705.1
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
23

Unit IDs

6D90|1|5|U|204
6D90|1|5|C|205
6D90|1|5|U|206
6D90|1|5|G|207
6D90|1|5|A|208
6D90|1|5|U|209
6D90|1|5|C|210
6D90|1|5|G|211

Current chains

Chain 5
28S rRNA

Nearby chains

Chain Y
uL24

Coloring options:


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