HL_6D90_063

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

6D90|1|5|C|1481, 6D90|1|5|G|1482, 6D90|1|5|C|1485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D90_063 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.3523

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6D90|1|5|G|1479
6D90|1|5|C|1480
6D90|1|5|C|1481
6D90|1|5|G|1482
6D90|1|5|C|1483
6D90|1|5|G|1484
6D90|1|5|C|1485
6D90|1|5|C|1486

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

eL13

Chain i

eL36