HL_6D90_088

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

6D90|1|5|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D90_088 not in the Motif Atlas

Homologous match to HL_8C3A_042

Geometric discrepancy: 0.1447

The information below is about HL_8C3A_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6D90|1|5|U|2810
6D90|1|5|G|2811
6D90|1|5|A|2812
6D90|1|5|A|2813
6D90|1|5|C|2814
6D90|1|5|A|2815
6D90|1|5|G|2816

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

eL19