HL_6D90_097

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6D90|1|5|A|3876, 6D90|1|5|A|3877, 6D90|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D90_097 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.123

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6D90|1|5|G|3873
6D90|1|5|G|3874
6D90|1|5|G|3875
6D90|1|5|A|3876
6D90|1|5|A|3877
6D90|1|5|C|3878
6D90|1|5|G|3879
6D90|1|5|G|3880
6D90|1|5|G|3881
6D90|1|5|C|3882

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain e

eL32