HL_6D90_121

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

6D90|1|8|U|123, 6D90|1|8|U|124, 6D90|1|8|C|125

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D90_121 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.3304

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6D90|1|8|G|121
6D90|1|8|G|122
6D90|1|8|U|123
6D90|1|8|U|124
6D90|1|8|C|125
6D90|1|8|C|126
6D90|1|8|U|127
6D90|1|8|C|128
6D90|1|8|C|129

Current chains

Chain 8

5.8S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain X

eL23