HL_6D90_128

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUCAUAAGCU

Length

11 nucleotides

Bulged bases

6D90|1|2|A|1663, 6D90|1|2|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|2|G|1657
6D90|1|2|G|1658
6D90|1|2|U|1659
6D90|1|2|C|1660
6D90|1|2|A|1661
6D90|1|2|U|1662
6D90|1|2|A|1663
6D90|1|2|A|1664
6D90|1|2|G|1665
6D90|1|2|C|1666
6D90|1|2|U|1667

Current chains

Chain 2

18S rRNA

Nearby chains

Chain RR

uS9

Chain UU

eS19

Chain VV

uS10

Chain ee

eS29