HL_6D90_137

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCGCUGGUGUGGA

Length

13 nucleotides

Bulged bases

6D90|1|5|G|1815, 6D90|1|5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|5|U|1813
6D90|1|5|C|1814
6D90|1|5|G|1815
6D90|1|5|C|1816
6D90|1|5|U|1817
6D90|1|5|G|1818
6D90|1|5|G|1819
6D90|1|5|U|1820
6D90|1|5|G|1821
6D90|1|5|U|1822
6D90|1|5|G|1823
6D90|1|5|G|1824
6D90|1|5|A|1825

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

uL18

Chain T

eL21

Chain b

eL29