Loop HL_6D90

3D structure

PDB id: 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

Loop

Sequence: GAUGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCAC
Length: 50 nucleotides
Bulged bases: None detected
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6D90|1|5|G|1969
6D90|1|5|A|1970
6D90|1|5|U|1971
6D90|1|5|G|1972
6D90|1|5|G|1973
6D90|1|5|U|1974
6D90|1|5|G|1975
6D90|1|5|G|1976
6D90|1|5|C|1977
6D90|1|5|C|1978
6D90|1|5|A|1979
6D90|1|5|U|1980
6D90|1|5|G|1981
6D90|1|5|G|1982
6D90|1|5|A|1983
6D90|1|5|A|1984
6D90|1|5|G|1985
6D90|1|5|U|1986
6D90|1|5|C|1987
6D90|1|5|G|1988
6D90|1|5|G|1989
6D90|1|5|A|1990
6D90|1|5|A|1991
6D90|1|5|U|1992
6D90|1|5|C|1993
6D90|1|5|C|1994
6D90|1|5|G|1995
6D90|1|5|C|1996
6D90|1|5|U|1997
6D90|1|5|A|1998
6D90|1|5|A|1999
6D90|1|5|G|2000
6D90|1|5|G|2001
6D90|1|5|A|2002
6D90|1|5|G|2003
6D90|1|5|U|2004
6D90|1|5|G|2005
6D90|1|5|U|2006
6D90|1|5|G|2007
6D90|1|5|U|2008
6D90|1|5|A|2009
6D90|1|5|A|2010
6D90|1|5|C|2011
6D90|1|5|A|2012
6D90|1|5|A|2013
6D90|1|5|C|2014
6D90|1|5|U|2015
6D90|1|5|C|2016
6D90|1|5|A|2017
6D90|1|5|C|2018

Current chains

Chain 5: 28S rRNA

Nearby chains

Chain I: uL16
Chain jj: eRF1
Chain m: eL40
Chain s: uL10
Chain t: uL11

HL_6D90_138