HL_6D90_139

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGGCCAUGGAAGUCGGAAUC

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|5|G|1973
6D90|1|5|U|1974
6D90|1|5|G|1975
6D90|1|5|G|1976
6D90|1|5|C|1977
6D90|1|5|C|1978
6D90|1|5|A|1979
6D90|1|5|U|1980
6D90|1|5|G|1981
6D90|1|5|G|1982
6D90|1|5|A|1983
6D90|1|5|A|1984
6D90|1|5|G|1985
6D90|1|5|U|1986
6D90|1|5|C|1987
6D90|1|5|G|1988
6D90|1|5|G|1989
6D90|1|5|A|1990
6D90|1|5|A|1991
6D90|1|5|U|1992
6D90|1|5|C|1993

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

uL16

Chain jj

eRF1

Chain s

uL10

Chain t

uL11