HL_6D90_147

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGCCGGAAAGGGGGCC

Length

16 nucleotides

Bulged bases

6D90|1|5|A|4910, 6D90|1|5|A|4911, 6D90|1|5|G|4914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|5|G|4903
6D90|1|5|G|4904
6D90|1|5|C|4905
6D90|1|5|C|4906
6D90|1|5|G|4907
6D90|1|5|G|4908
6D90|1|5|A|4909
6D90|1|5|A|4910
6D90|1|5|A|4911
6D90|1|5|G|4912
6D90|1|5|G|4913
6D90|1|5|G|4914
6D90|1|5|G|4915
6D90|1|5|G|4916
6D90|1|5|C|4917
6D90|1|5|C|4918

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain M

eL14

Chain O

uL13