HL_6D90_150

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

6D90|1|2|U|887, 6D90|1|2|G|891

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|2|U|885
6D90|1|2|A|886
6D90|1|2|U|887
6D90|1|2|U|888
6D90|1|2|U|889
6D90|1|2|U|890
6D90|1|2|G|891
6D90|1|2|U|892
6D90|1|2|U|893
6D90|1|2|G|894
6D90|1|2|G|895
6D90|1|2|U|896
6D90|1|2|U|897
6D90|1|2|U|898
6D90|1|2|U|899
6D90|1|2|C|900
6D90|1|2|G|901

Current chains

Chain 2

18S rRNA

Nearby chains

Chain HH

eS6