HL_6D90_160

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6D90|1|5|G|2421, 6D90|1|5|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D90_160 not in the Motif Atlas

Homologous match to HL_8CRE_031

Geometric discrepancy: 0.2774

The information below is about HL_8CRE_031

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6D90|1|5|A|2420
6D90|1|5|G|2421
6D90|1|5|C|2422
6D90|1|5|A|2423
6D90|1|5|G|2424
6D90|1|5|U|2425
6D90|1|5|U|2426

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain l

eL39