HL_6D90_161

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

6D90|1|5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D90_161 not in the Motif Atlas

Homologous match to HL_8P9A_148

Geometric discrepancy: 0.1747

The information below is about HL_8P9A_148

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_22758.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6D90|1|5|G|2624
6D90|1|5|U|2625
6D90|1|5|U|2626
6D90|1|5|C|2627
6D90|1|5|U|2628
6D90|1|5|C|2629
6D90|1|5|U|2630
6D90|1|5|U|2631
6D90|1|5|U|2632

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

eL19

Chain U

eL22