HL_6D9J_013

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.2496

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6D9J|1|2|A|569
6D9J|1|2|C|570
6D9J|1|2|U|571
6D9J|1|2|U|572
6D9J|1|2|U|573
6D9J|1|2|A|574
6D9J|1|2|A|575
6D9J|1|2|A|576
6D9J|1|2|U|577
6D9J|1|2|C|578
6D9J|1|2|C|579
6D9J|1|2|U|580
6D9J|1|2|U|581

Current chains

Chain 2

18S rRNA

Nearby chains

Chain KK

uS4

Chain ZZ

eS24