6D9J Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6D9J_001 | 1/2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_6D9J_002 | 1/2/69:80 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_6D9J_003 | 1/2/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_6D9J_121 | 1/2/197:202 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_6D9J_122 | 1/2/223:298 | No text annotation | ||
| HL_6D9J_005 | 1/2/288:295 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_6D9J_006 | 1/2/321:330 | No text annotation | geometric HL_8H9D_001 NA | |
| HL_6D9J_007 | 1/2/377:387 | No text annotation | geometric HL_6UFM_001 HL_04642.1 | |
| HL_6D9J_008 | 1/2/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6D9J_009 | 1/2/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_6D9J_010 | 1/2/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_6D9J_011 | 1/2/498:504 | No text annotation | homologous HL_4V88_197 NA | |
| HL_6D9J_012 | 1/2/539:544 | GNRA | geometric HL_6WPI_001 HL_37824.8 | |
| HL_6D9J_013 | 1/2/569:581 | No text annotation | geometric HL_4V88_199 NA | |
| HL_6D9J_014 | 1/2/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6D9J_015 | 1/2/696:730 | No text annotation | geometric HL_1KH6_003 HL_27483.1 | |
| HL_6D9J_016 | 1/2/819:829 | No text annotation | ||
| HL_6D9J_017 | 1/2/832:842 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_6D9J_018 | 1/2/885:901 | No text annotation | ||
| HL_6D9J_019 | 1/2/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_6D9J_020 | 1/2/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_6D9J_021 | 1/2/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_6D9J_022 | 1/2/1114:1119 | No text annotation | ||
| HL_6D9J_023 | 1/2/1142:1146 | No text annotation | ||
| HL_6D9J_125 | 1/2/1168:1191 | No text annotation | ||
| HL_6D9J_024 | 1/2/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_6D9J_025 | 1/2/1245:1254 | No text annotation | homologous HL_4V88_212 NA | |
| HL_6D9J_026 | 1/2/1295:1304 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_6D9J_027 | 1/2/1353:1359 | No text annotation | ||
| HL_6D9J_028 | 1/2/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6D9J_029 | 1/2/1416:1424 | No text annotation | ||
| HL_6D9J_030 | 1/2/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
| HL_6D9J_031 | 1/2/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_6D9J_032 | 1/2/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
| HL_6D9J_033 | 1/2/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
| HL_6D9J_034 | 1/2/1760:1772 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_6D9J_135 | 1/2/1847:1852 | No text annotation | homologous HL_8CRE_225 HL_37824.8 | |
| HL_6D9J_036 | 1/3/12:24 | No text annotation | homologous HL_1QTQ_001 HL_40252.4 | |
| HL_6D9J_037 | 1/3/32:40 | tRNA anticodon loop | homologous HL_6ORD_036 NA | |
| HL_6D9J_038 | 1/3/49:55 | No text annotation | ||
| HL_6D9J_039 | 1/3/64:72 | T-loop with 2 stacked bulged bases | homologous HL_4V90_034 HL_28252.9 | |
| HL_6D9J_040 | 1/4/6050:6077 | No text annotation | ||
| HL_6D9J_041 | 1/4/6110:6115 | No text annotation | ||
| HL_6D9J_042 | 1/4/6141:6147 | No text annotation | ||
| HL_6D9J_136 | 1/4/6179:6197 | No text annotation | ||
| HL_6D9J_044 | 1/5/37:44 | No text annotation | geometric HL_5TBW_001 NA | |
| HL_6D9J_045 | 1/5/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6D9J_046 | 1/5/89:95 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_6D9J_047 | 1/5/131:137 | No text annotation | ||
| HL_6D9J_048 | 1/5/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6D9J_049 | 1/5/222:226 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6D9J_050 | 1/5/230:238 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_6D9J_051 | 1/5/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_6D9J_137 | 1/5/314:323 | No text annotation | homologous HL_8CRE_009 HL_77600.2 | |
| HL_6D9J_053 | 1/5/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6D9J_054 | 1/5/393:398 | GNRA | homologous HL_5TBW_011 NA | |
| HL_6D9J_055 | 1/5/759:904 | No text annotation | ||
| HL_6D9J_056 | 1/5/962:970 | No text annotation | ||
| HL_6D9J_128 | 1/5/988:1066 | No text annotation | ||
| HL_6D9J_057 | 1/5/1178:1183 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6D9J_058 | 1/5/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_6D9J_059 | 1/5/1364:1373 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_6D9J_060 | 1/5/1389:1394 | GNRA | homologous HL_8C3A_016 NA | |
| HL_6D9J_061 | 1/5/1404:1413 | No text annotation | geometric HL_4V88_198 NA | |
| HL_6D9J_062 | 1/5/1436:1448 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_6D9J_063 | 1/5/1479:1486 | No text annotation | ||
| HL_6D9J_064 | 1/5/1561:1566 | GNRA | homologous HL_8C3A_019 NA | |
| HL_6D9J_065 | 1/5/1593:1602 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_6D9J_066 | 1/5/1627:1635 | No text annotation | geometric HL_5TBW_021 NA | |
| HL_6D9J_067 | 1/5/1675:1680 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6D9J_068 | 1/5/1763:1769 | GNRA | geometric HL_5TBW_023 NA | |
| HL_6D9J_069 | 1/5/1816:1823 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_6D9J_070 | 1/5/1864:1870 | GNRA | homologous HL_5TBW_025 NA | |
| HL_6D9J_071 | 1/5/1886:1893 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6D9J_072 | 1/5/1978:1988 | No text annotation | homologous HL_8C3A_027 NA | |
| HL_6D9J_073 | 1/5/2006:2013 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_6D9J_074 | 1/5/2087:2270 | No text annotation | ||
| HL_6D9J_075 | 1/5/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6D9J_076 | 1/5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_6D9J_077 | 1/5/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_6D9J_078 | 1/5/2458:2463 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_6D9J_079 | 1/5/2487:2491 | Mini UNCG | geometric HL_5T16_002 HL_56334.1 | |
| HL_6D9J_080 | 1/5/2523:2532 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_6D9J_081 | 1/5/2561:2566 | GNRA | geometric HL_5FQ5_003 HL_37824.8 | |
| HL_6D9J_082 | 1/5/2578:2583 | GNRA | homologous HL_8C3A_036 NA | |
| HL_6D9J_083 | 1/5/2624:2632 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_6D9J_084 | 1/5/2664:2671 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_6D9J_130 | 1/5/2704:2712 | No text annotation | homologous HL_8C3A_039 NA | |
| HL_6D9J_085 | 1/5/2705:2710 | No text annotation | geometric HL_4V9F_011 HL_75660.5 | |
| HL_6D9J_086 | 1/5/2792:2799 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_6D9J_087 | 1/5/2810:2816 | GNRA | homologous HL_8C3A_042 NA | |
| HL_6D9J_088 | 1/5/2867:2883 | No text annotation | ||
| HL_6D9J_089 | 1/5/2901:3598 | No text annotation | ||
| HL_6D9J_090 | 1/5/3639:3649 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_6D9J_091 | 1/5/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6D9J_092 | 1/5/3724:3729 | GNRA | homologous HL_5TBW_048 NA | |
| HL_6D9J_093 | 1/5/3757:3767 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_6D9J_094 | 1/5/3796:3804 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_6D9J_095 | 1/5/3873:3882 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_6D9J_096 | 1/5/4193:4201 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_6D9J_097 | 1/5/4210:4222 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_6D9J_133 | 1/5/4247:4261 | No text annotation | ||
| HL_6D9J_098 | 1/5/4250:4258 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_6D9J_099 | 1/5/4270:4277 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_6D9J_100 | 1/5/4301:4309 | No text annotation | homologous HL_5TBW_058 NA | |
| HL_6D9J_138 | 1/5/4321:4326 | No text annotation | homologous HL_8CRE_058 HL_37824.8 | |
| HL_6D9J_102 | 1/5/4352:4362 | No text annotation | geometric HL_4V83_139 NA | |
| HL_6D9J_103 | 1/5/4417:4425 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_6D9J_139 | 1/5/4473:4482 | No text annotation | ||
| HL_6D9J_134 | 1/5/4495:4505 | No text annotation | ||
| HL_6D9J_105 | 1/5/4497:4503 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_6D9J_106 | 1/5/4540:4545 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6D9J_107 | 1/5/4603:4608 | GNRA | homologous HL_5TBW_065 NA | |
| HL_6D9J_108 | 1/5/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_6D9J_109 | 1/5/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6D9J_110 | 1/5/4775:4860 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_6D9J_111 | 1/5/4906:4915 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_6D9J_112 | 1/5/4975:4983 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_6D9J_113 | 1/5/5021:5028 | Mini UNCG | homologous HL_5TBW_071 NA | |
| HL_6D9J_114 | 1/7/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_6D9J_115 | 1/7/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6D9J_116 | 1/8/47:56 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_6D9J_117 | 1/8/67:91 | No text annotation | ||
| HL_6D9J_118 | 1/8/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6D9J_119 | 1/8/121:129 | No text annotation | geometric HL_4LX6_002 HL_31585.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6D9J_120 | No text annotation | ||
| HL_6D9J_004 | GNRA wlth tandem sheared | ||
| HL_6D9J_123 | tRNA D-loop | ||
| HL_6D9J_124 | GNRA with extra cWW | ||
| HL_6D9J_126 | No text annotation | ||
| HL_6D9J_035 | No text annotation | ||
| HL_6D9J_043 | No text annotation | ||
| HL_6D9J_127 | No text annotation | ||
| HL_6D9J_052 | No text annotation | ||
| HL_6D9J_129 | No text annotation | ||
| HL_6D9J_131 | No text annotation | ||
| HL_6D9J_132 | No text annotation | ||
| HL_6D9J_101 | tRNA anticodon loop | ||
| HL_6D9J_104 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6D9J_001 | 1/2/23:25, 1/2/649:651 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 IL_87907.2 | |
| IL_6D9J_002 | 1/2/34:36, 1/2/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_6D9J_003 | 1/2/37:40, 1/2/514:518 | No text annotation | ||
| IL_6D9J_004 | 1/2/41:47, 1/2/479:481 | No text annotation | homologous IL_4V88_387 NA | |
| IL_6D9J_005 | 1/2/49:51, 1/2/476:477 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_6D9J_006 | 1/2/56:62, 1/2/86:89 | Other IL | geometric IL_5TBW_043 NA | |
| IL_6D9J_007 | 1/2/63:68, 1/2/81:85 | No text annotation | homologous IL_4V88_390 NA | |
| IL_6D9J_008 | 1/2/108:112, 1/2/349:353 | No text annotation | geometric IL_4Z31_001 IL_61242.1 | |
| IL_6D9J_009 | 1/2/112:115, 1/2/348:349 | Multiple bulged bases | geometric IL_5WLH_001 IL_82107.5 | |
| IL_6D9J_264 | 1/2/112:121, 1/2/343:349 | No text annotation | ||
| IL_6D9J_010 | 1/2/116:121, 1/2/343:347 | No text annotation | homologous IL_4V88_393 NA | |
| IL_6D9J_011 | 1/2/130:144, 1/2/175:182 | No text annotation | ||
| IL_6D9J_012 | 1/2/145:151, 1/2/167:174 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_6D9J_013 | 1/2/152:155, 1/2/163:166 | Other IL | geometric IL_5J7L_327 IL_43644.1 | |
| IL_6D9J_014 | 1/2/188:193, 1/2/207:211 | No text annotation | ||
| IL_6D9J_332 | 1/2/188:194, 1/2/205:211 | No text annotation | ||
| IL_6D9J_015 | 1/2/193:194, 1/2/205:207 | Single stack bend | geometric IL_4WF9_007 IL_90729.1 | |
| IL_6D9J_016 | 1/2/216:219, 1/2/302:309 | No text annotation | ||
| IL_6D9J_017 | 1/2/223:288, 1/2/295:298 | No text annotation | ||
| IL_6D9J_018 | 1/2/312:314, 1/2/336:337 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_6D9J_019 | 1/2/315:319, 1/2/332:335 | No text annotation | ||
| IL_6D9J_020 | 1/2/359:364, 1/2/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_6D9J_021 | 1/2/366:371, 1/2/393:394 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_6D9J_022 | 1/2/411:413, 1/2/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6D9J_023 | 1/2/437:439, 1/2/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_6D9J_024 | 1/2/487:489, 1/2/511:512 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_6D9J_025 | 1/2/491:495, 1/2/508:509 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_6D9J_026 | 1/2/495:496, 1/2/506:508 | Single bulged G | geometric IL_4LFB_016 IL_00225.14 | |
| IL_6D9J_027 | 1/2/529:531, 1/2/553:556 | Isolated non-canonical cWW pair | geometric IL_3TD0_005 IL_57744.1 | |
| IL_6D9J_028 | 1/2/534:537, 1/2/546:550 | No text annotation | ||
| IL_6D9J_029 | 1/2/563:565, 1/2/585:592 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_6D9J_269 | 1/2/563:569, 1/2/581:592 | No text annotation | ||
| IL_6D9J_030 | 1/2/566:569, 1/2/581:584 | Double sheared | geometric IL_5AOX_003 IL_09705.15 | |
| IL_6D9J_031 | 1/2/599:608, 1/2/635:637 | Isolated non-canonical cWW pair | geometric IL_4ZC7_004 IL_87907.2 | |
| IL_6D9J_032 | 1/2/611:617, 1/2/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_6D9J_033 | 1/2/665:671, 1/2/1161:1162 | No text annotation | homologous IL_4V88_416 NA | |
| IL_6D9J_034 | 1/2/673:675, 1/2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6D9J_035 | 1/2/676:680, 1/2/1025:1029 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_6D9J_036 | 1/2/692:696, 1/2/730:734 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6D9J_037 | 1/2/745:749, 1/2/794:796 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_6D9J_038 | 1/2/752:754, 1/2/790:791 | No text annotation | ||
| IL_6D9J_039 | 1/2/802:803, 1/2/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_6D9J_333 | 1/2/802:804, 1/2/859:863 | 8-nt loop receptor | geometric IL_6DME_002 IL_36516.3 | |
| IL_6D9J_040 | 1/2/805:807, 1/2/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_6D9J_041 | 1/2/807:815, 1/2/849:856 | No text annotation | geometric IL_4V88_425 NA | |
| IL_6D9J_042 | 1/2/874:876, 1/2/910:912 | Isolated non-canonical cWW pair | geometric IL_5MWI_007 NA | |
| IL_6D9J_043 | 1/2/877:879, 1/2/907:909 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_6D9J_044 | 1/2/922:923, 1/2/1019:1022 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_6D9J_334 | 1/2/925:927, 1/2/1014:1017 | Isolated non-canonical cWW pair | homologous IL_8P9A_418 IL_57744.1 | |
| IL_6D9J_046 | 1/2/927:931, 1/2/1010:1014 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6D9J_275 | 1/2/927:935, 1/2/1007:1014 | No text annotation | ||
| IL_6D9J_047 | 1/2/931:935, 1/2/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_6D9J_048 | 1/2/942:945, 1/2/981:984 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_6D9J_335 | 1/2/952:956, 1/2/967:974 | Kink-turn | geometric IL_5J7L_035 IL_01488.3 | |
| IL_6D9J_050 | 1/2/1042:1047, 1/2/1071:1073 | Other IL | geometric IL_4V88_435 NA | |
| IL_6D9J_336 | 1/2/1042:1051, 1/2/1067:1073 | No text annotation | ||
| IL_6D9J_051 | 1/2/1047:1051, 1/2/1067:1071 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_6D9J_052 | 1/2/1091:1093, 1/2/1152:1158 | No text annotation | homologous IL_4V88_437 NA | |
| IL_6D9J_277 | 1/2/1094:1096, 1/2/1136:1151 | No text annotation | ||
| IL_6D9J_053 | 1/2/1098:1103, 1/2/1129:1134 | No text annotation | geometric IL_5TBW_476 NA | |
| IL_6D9J_054 | 1/2/1108:1110, 1/2/1123:1124 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_6D9J_055 | 1/2/1206:1208, 1/2/1691:1692 | No text annotation | ||
| IL_6D9J_056 | 1/2/1214:1217, 1/2/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
| IL_6D9J_057 | 1/2/1230:1232, 1/2/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_6D9J_058 | 1/2/1235:1236, 1/2/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6D9J_059 | 1/2/1281:1287, 1/2/1314:1316 | No text annotation | ||
| IL_6D9J_278 | 1/2/1281:1290, 1/2/1309:1316 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_6D9J_060 | 1/2/1287:1290, 1/2/1309:1314 | No text annotation | ||
| IL_6D9J_061 | 1/2/1291:1294, 1/2/1305:1308 | No text annotation | ||
| IL_6D9J_062 | 1/2/1325:1327, 1/2/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_6D9J_063 | 1/2/1329:1333, 1/2/1498:1500 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_6D9J_280 | 1/2/1329:1335, 1/2/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_6D9J_064 | 1/2/1333:1335, 1/2/1492:1498 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_6D9J_065 | 1/2/1337:1338, 1/2/1488:1490 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_6D9J_281 | 1/2/1337:1340, 1/2/1486:1490 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_85033.2 | |
| IL_6D9J_066 | 1/2/1347:1349, 1/2/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_6D9J_067 | 1/2/1351:1353, 1/2/1359:1360 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_6D9J_068 | 1/2/1363:1365, 1/2/1374:1375 | Minor groove platform | geometric IL_6DTD_003 IL_51454.3 | |
| IL_6D9J_069 | 1/2/1395:1399, 1/2/1447:1450 | No text annotation | ||
| IL_6D9J_337 | 1/2/1395:1401, 1/2/1445:1450 | No text annotation | ||
| IL_6D9J_070 | 1/2/1399:1402, 1/2/1444:1447 | Self complementary | geometric IL_3NDB_001 NA | |
| IL_6D9J_071 | 1/2/1402:1405, 1/2/1441:1444 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_6D9J_072 | 1/2/1412:1413, 1/2/1427:1429 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
| IL_6D9J_073 | 1/2/1537:1539, 1/2/1594:1596 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_6D9J_284 | 1/2/1541:1559, 1/2/1576:1592 | No text annotation | ||
| IL_6D9J_074 | 1/2/1550:1559, 1/2/1576:1582 | No text annotation | ||
| IL_6D9J_338 | 1/2/1560:1563, 1/2/1572:1575 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_85033.2 | |
| IL_6D9J_076 | 1/2/1604:1610, 1/2/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_6D9J_077 | 1/2/1706:1708, 1/2/1826:1828 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_87907.2 | |
| IL_6D9J_078 | 1/2/1708:1711, 1/2/1822:1826 | No text annotation | geometric IL_6AZ4_001 NA | |
| IL_6D9J_079 | 1/2/1714:1716, 1/2/1817:1819 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_6D9J_080 | 1/2/1717:1720, 1/2/1813:1816 | Double sheared | homologous IL_4V88_468 NA | |
| IL_6D9J_081 | 1/2/1720:1722, 1/2/1812:1813 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_6D9J_339 | 1/2/1727:1731, 1/2/1803:1807 | Partly complementary | geometric IL_8D29_010 IL_49751.4 | |
| IL_6D9J_082 | 1/2/1729:1731, 1/2/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_6D9J_083 | 1/2/1733:1736, 1/2/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_6D9J_084 | 1/2/1739:1741, 1/2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_87907.2 | |
| IL_6D9J_085 | 1/2/1742:1746, 1/2/1788:1792 | Triple sheared | homologous IL_4V88_474 NA | |
| IL_6D9J_086 | 1/2/1750:1751, 1/2/1782:1784 | No text annotation | ||
| IL_6D9J_087 | 1/2/1751:1753, 1/2/1780:1782 | Stack and bulge | geometric IL_2ET8_001 IL_31737.3 | |
| IL_6D9J_088 | 1/2/1753:1754, 1/2/1778:1780 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_6D9J_089 | 1/3/47:49, 1/3/55:56 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6D9J_287 | 1/4/6031:6045, 1/4/6082:6094 | No text annotation | ||
| IL_6D9J_090 | 1/4/6127:6129, 1/4/6157:6159 | No text annotation | ||
| IL_6D9J_091 | 1/4/6132:6140, 1/4/6148:6154 | No text annotation | ||
| IL_6D9J_092 | 1/5/5:7, 1/8/149:152 | Isolated non-canonical cWW pair | geometric IL_4KYY_002 IL_07785.1 | |
| IL_6D9J_093 | 1/5/8:14, 1/8/143:148 | No text annotation | ||
| IL_6D9J_289 | 1/5/8:16, 1/8/141:148 | No text annotation | ||
| IL_6D9J_094 | 1/5/16:18, 1/8/139:141 | Isolated non-canonical cWW pair | geometric IL_7A0S_031 IL_87907.2 | |
| IL_6D9J_095 | 1/5/26:27, 1/5/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_6D9J_340 | 1/5/31:37, 1/5/44:51 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 IL_04346.10 | |
| IL_6D9J_097 | 1/5/82:88, 1/5/96:101 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_7RQB_007 NA | |
| IL_6D9J_098 | 1/5/118:121, 1/5/152:153 | Minor groove platform | geometric IL_6CZR_119 NA | |
| IL_6D9J_290 | 1/5/118:122, 1/5/147:153 | No text annotation | ||
| IL_6D9J_099 | 1/5/121:122, 1/5/147:152 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_6D9J_100 | 1/5/123:126, 1/5/142:146 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_6D9J_101 | 1/5/128:130, 1/5/139:140 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6D9J_102 | 1/5/130:131, 1/5/137:139 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6D9J_341 | 1/5/168:173, 1/5/263:267 | No text annotation | ||
| IL_6D9J_103 | 1/5/180:182, 1/5/255:256 | No text annotation | ||
| IL_6D9J_104 | 1/5/182:189, 1/5/252:255 | No text annotation | ||
| IL_6D9J_105 | 1/5/194:196, 1/5/244:247 | Isolated non-canonical cWW contact | geometric IL_5UNE_001 IL_44465.1 | |
| IL_6D9J_106 | 1/5/199:201, 1/5/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_6D9J_107 | 1/5/339:344, 1/8/30:33 | No text annotation | ||
| IL_6D9J_108 | 1/5/348:350, 1/8/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6D9J_109 | 1/5/387:390, 1/5/401:414 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_6D9J_110 | 1/5/415:421, 1/8/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_6D9J_111 | 1/5/443:446, 1/5/1300:1304 | No text annotation | ||
| IL_6D9J_112 | 1/5/448:451, 1/5/1296:1298 | Other IL | geometric IL_7A0S_092 IL_08770.1 | |
| IL_6D9J_113 | 1/5/459:460, 1/5/695:697 | Single bulged C | geometric IL_1S03_006 IL_61258.15 | |
| IL_6D9J_342 | 1/5/462:464, 1/5/691:693 | Isolated non-canonical cWW pair | geometric IL_8P9A_270 IL_87907.2 | |
| IL_6D9J_115 | 1/5/466:472, 1/5/682:689 | No text annotation | ||
| IL_6D9J_116 | 1/5/480:486, 1/5/670:674 | No text annotation | ||
| IL_6D9J_117 | 1/5/487:488, 1/5/665:669 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_6D9J_118 | 1/5/491:493, 1/5/661:662 | Single bulged U | geometric IL_5TBW_146 NA | |
| IL_6D9J_343 | 1/5/497:499, 1/5/656:657 | No text annotation | ||
| IL_6D9J_120 | 1/5/508:510, 1/5/649:650 | Single bulged A | geometric IL_7RQB_033 NA | |
| IL_6D9J_297 | 1/5/520:523, 1/5/638:641 | No text annotation | ||
| IL_6D9J_122 | 1/5/709:710, 1/5/1286:1288 | Single bulged G | geometric IL_4LFB_036 IL_00225.14 | |
| IL_6D9J_123 | 1/5/723:724, 1/5/942:945 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_6D9J_124 | 1/5/727:731, 1/5/938:939 | No text annotation | ||
| IL_6D9J_125 | 1/5/732:737, 1/5/926:937 | No text annotation | ||
| IL_6D9J_126 | 1/5/737:739, 1/5/923:926 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_6D9J_127 | 1/5/739:743, 1/5/921:923 | No text annotation | ||
| IL_6D9J_301 | 1/5/744:752, 1/5/911:920 | No text annotation | ||
| IL_6D9J_129 | 1/5/980:982, 1/5/1273:1275 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_6D9J_130 | 1/5/1077:1080, 1/5/1219:1233 | No text annotation | ||
| IL_6D9J_302 | 1/5/1080:1084, 1/5/1213:1219 | No text annotation | ||
| IL_6D9J_131 | 1/5/1082:1084, 1/5/1213:1217 | Isolated cWS basepair | geometric IL_4WF9_034 NA | |
| IL_6D9J_132 | 1/5/1086:1087, 1/5/1209:1211 | No text annotation | ||
| IL_6D9J_133 | 1/5/1097:1098, 1/5/1197:1199 | Single stack bend | geometric IL_4V9F_081 IL_26793.1 | |
| IL_6D9J_134 | 1/5/1100:1168, 1/5/1193:1195 | Stack and bulge | geometric IL_2ET8_001 IL_31737.3 | |
| IL_6D9J_135 | 1/5/1173:1177, 1/5/1184:1188 | No text annotation | ||
| IL_6D9J_136 | 1/5/1357:1360, 1/5/1379:1382 | No text annotation | ||
| IL_6D9J_303 | 1/5/1357:1361, 1/5/1376:1382 | No text annotation | ||
| IL_6D9J_137 | 1/5/1360:1361, 1/5/1376:1379 | Minor groove platform | geometric IL_4LFB_007 IL_33761.2 | |
| IL_6D9J_138 | 1/5/1425:1429, 1/5/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_97631.1 | |
| IL_6D9J_139 | 1/5/1431:1434, 1/5/1450:1453 | Double sheared | geometric IL_4LFB_060 IL_09705.15 | |
| IL_6D9J_140 | 1/5/1467:1468, 1/5/1496:1498 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_6D9J_141 | 1/5/1474:1476, 1/5/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_6D9J_142 | 1/5/1520:1522, 1/5/1655:1657 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_87907.2 | |
| IL_6D9J_143 | 1/5/1522:1526, 1/5/1648:1655 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_6D9J_144 | 1/5/1550:1551, 1/5/1576:1578 | Single bulged G | homologous IL_8P9A_257 IL_00225.14 | |
| IL_6D9J_145 | 1/5/1551:1555, 1/5/1572:1576 | Triple sheared | geometric IL_4WF9_024 IL_50730.2 | |
| IL_6D9J_146 | 1/5/1586:1589, 1/5/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_6D9J_147 | 1/5/1590:1592, 1/5/1603:1604 | Single bulged U | homologous IL_5TBW_032 NA | |
| IL_6D9J_304 | 1/5/1624:1626, 1/5/1636:1640 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_6D9J_149 | 1/5/1686:1688, 1/5/1848:1851 | Isolated non-canonical cWW with bulges | geometric IL_5ML7_010 IL_07785.1 | |
| IL_6D9J_150 | 1/5/1694:1721, 1/5/1841:1842 | No text annotation | ||
| IL_6D9J_151 | 1/5/1723:1725, 1/5/1838:1839 | Single bulged G | homologous IL_5TBW_037 NA | |
| IL_6D9J_152 | 1/5/1732:1737, 1/5/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_6D9J_305 | 1/5/1732:1744, 1/5/1786:1797 | No text annotation | ||
| IL_6D9J_153 | 1/5/1737:1738, 1/5/1790:1792 | Minor groove platform | geometric IL_7A0S_028 IL_51454.3 | |
| IL_6D9J_154 | 1/5/1738:1744, 1/5/1786:1790 | No text annotation | ||
| IL_6D9J_155 | 1/5/1746:1749, 1/5/1781:1784 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_6D9J_344 | 1/5/1746:1751, 1/5/1779:1784 | No text annotation | ||
| IL_6D9J_156 | 1/5/1749:1751, 1/5/1779:1781 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_6D9J_307 | 1/5/1753:1756, 1/5/1776:1777 | Major groove platform | geometric IL_8DP3_001 IL_02555.1 | |
| IL_6D9J_345 | 1/5/1759:1761, 1/5/1772:1773 | No text annotation | ||
| IL_6D9J_159 | 1/5/1761:1763, 1/5/1769:1772 | No text annotation | ||
| IL_6D9J_160 | 1/5/1814:1816, 1/5/1823:1824 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_6D9J_161 | 1/5/1858:1860, 1/5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_6D9J_308 | 1/5/1905:1909, 1/5/2067:2071 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_6D9J_163 | 1/5/1911:1920, 1/5/2063:2065 | No text annotation | geometric IL_1NBS_006 NA | |
| IL_6D9J_164 | 1/5/1920:1922, 1/5/2062:2063 | No text annotation | ||
| IL_6D9J_165 | 1/5/1926:1933, 1/5/2053:2058 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_6D9J_166 | 1/5/1933:1944, 1/5/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6D9J_346 | 1/5/1946:1948, 1/5/2035:2036 | No text annotation | homologous IL_8CRE_056 IL_89505.4 | |
| IL_6D9J_168 | 1/5/1957:1965, 1/5/2022:2026 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_6D9J_169 | 1/5/1973:1977, 1/5/1989:1993 | No text annotation | homologous IL_8C3A_058 NA | |
| IL_6D9J_170 | 1/5/2001:2005, 1/5/2014:2016 | Major groove platform with extra cWW | homologous IL_8C3A_059 NA | |
| IL_6D9J_171 | 1/5/2083:2085, 1/5/2272:2273 | Single bulged U | geometric IL_4LFB_046 IL_89505.4 | |
| IL_6D9J_172 | 1/5/2290:2292, 1/5/2342:2345 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_6D9J_173 | 1/5/2299:2301, 1/5/2334:2335 | Single bulged A | geometric IL_3OXE_001 IL_31462.7 | |
| IL_6D9J_174 | 1/5/2302:2309, 1/5/2329:2333 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_6D9J_175 | 1/5/2312:2314, 1/5/2325:2326 | Single bulged A | geometric IL_5WWT_001 IL_31462.7 | |
| IL_6D9J_176 | 1/5/2358:2364, 1/5/3858:3863 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_6D9J_177 | 1/5/2415:2419, 1/5/2427:2429 | C-loop | homologous IL_8C3A_482 NA | |
| IL_6D9J_178 | 1/5/2446:2450, 1/5/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6D9J_179 | 1/5/2477:2479, 1/5/2499:2500 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_6D9J_180 | 1/5/2542:2547, 1/5/2772:2774 | No text annotation | geometric IL_6DME_003 IL_55516.2 | |
| IL_6D9J_181 | 1/5/2549:2550, 1/5/2768:2770 | Single bulged U | geometric IL_5TBW_131 NA | |
| IL_6D9J_347 | 1/5/2598:2602, 1/5/2737:2747 | No text annotation | ||
| IL_6D9J_182 | 1/5/2613:2614, 1/5/2724:2726 | Single bulged A | geometric IL_1U63_004 IL_31462.7 | |
| IL_6D9J_183 | 1/5/2614:2616, 1/5/2721:2724 | Other IL | geometric IL_5TBW_064 NA | |
| IL_6D9J_184 | 1/5/2646:2648, 1/5/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_85599.2 | |
| IL_6D9J_348 | 1/5/2649:2653, 1/5/2681:2684 | Tandem non-canonical cWW pairs | geometric IL_3WBM_002 IL_85033.2 | |
| IL_6D9J_186 | 1/5/2656:2662, 1/5/2672:2678 | Kink-turn | geometric IL_5TBW_073 NA | |
| IL_6D9J_187 | 1/5/2662:2664, 1/5/2671:2672 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6D9J_188 | 1/5/2704:2705, 1/5/2710:2712 | No text annotation | ||
| IL_6D9J_189 | 1/5/2832:2838, 1/5/3850:3853 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_6D9J_349 | 1/5/2843:2846, 1/5/3842:3845 | No text annotation | ||
| IL_6D9J_191 | 1/5/2847:2850, 1/5/3840:3841 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_6D9J_315 | 1/5/2847:2855, 1/5/3837:3841 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_6D9J_192 | 1/5/2850:2855, 1/5/3837:3840 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_6D9J_193 | 1/5/2889:2891, 1/5/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6D9J_194 | 1/5/2896:2897, 1/5/3602:3605 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_6D9J_195 | 1/5/3632:3633, 1/5/3827:3829 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_6D9J_196 | 1/5/3660:3665, 1/5/3677:3684 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6D9J_197 | 1/5/3700:3703, 1/5/3749:3750 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_6D9J_198 | 1/5/3704:3705, 1/5/3745:3748 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_6D9J_199 | 1/5/3708:3710, 1/5/3741:3742 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6D9J_200 | 1/5/3710:3714, 1/5/3739:3741 | No text annotation | ||
| IL_6D9J_317 | 1/5/3710:3721, 1/5/3732:3741 | No text annotation | ||
| IL_6D9J_201 | 1/5/3714:3721, 1/5/3732:3739 | No text annotation | ||
| IL_6D9J_202 | 1/5/3780:3794, 1/5/3806:3814 | No text annotation | ||
| IL_6D9J_203 | 1/5/3895:3898, 1/5/4563:4565 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_6D9J_204 | 1/5/3900:3902, 1/5/4558:4561 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_6D9J_205 | 1/5/3913:3915, 1/5/4388:4389 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6D9J_206 | 1/5/3916:3917, 1/5/4384:4387 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6D9J_207 | 1/5/3927:3929, 1/5/4181:4184 | Isolated tHS basepair with bulges | homologous IL_5TBW_095 NA | |
| IL_6D9J_208 | 1/5/3939:3941, 1/5/4072:4075 | No text annotation | ||
| IL_6D9J_209 | 1/5/3948:3949, 1/5/4063:4065 | No text annotation | ||
| IL_6D9J_210 | 1/5/3950:3952, 1/5/4060:4062 | No text annotation | geometric IL_1NBS_006 NA | |
| IL_6D9J_211 | 1/5/3954:3966, 1/5/4055:4058 | No text annotation | ||
| IL_6D9J_319 | 1/5/3954:3963, 1/5/4049:4058 | No text annotation | ||
| IL_6D9J_320 | 1/5/3954:3973, 1/5/4038:4058 | No text annotation | ||
| IL_6D9J_321 | 1/5/3963:3973, 1/5/4038:4049 | No text annotation | ||
| IL_6D9J_212 | 1/5/3969:3973, 1/5/4038:4052 | No text annotation | ||
| IL_6D9J_213 | 1/5/4081:4088, 1/5/4161:4165 | No text annotation | ||
| IL_6D9J_350 | 1/5/4095:4097, 1/5/4112:4113 | Single stack bend | geometric IL_7MLX_001 IL_90729.1 | |
| IL_6D9J_215 | 1/5/4100:4101, 1/5/4107:4109 | Single stack bend | geometric IL_4V9F_005 IL_90729.1 | |
| IL_6D9J_216 | 1/5/4191:4192, 1/5/4202:4204 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_6D9J_217 | 1/5/4243:4245, 1/5/4263:4267 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_6D9J_218 | 1/5/4291:4293, 1/5/4317:4318 | Single bulged A | geometric IL_5TBW_013 NA | |
| IL_6D9J_219 | 1/5/4295:4297, 1/5/4314:4315 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_6D9J_351 | 1/5/4295:4298, 1/5/4312:4315 | No text annotation | homologous IL_8P9A_327 IL_85033.2 | |
| IL_6D9J_220 | 1/5/4297:4298, 1/5/4312:4314 | Single stack bend | geometric IL_4V9F_081 IL_26793.1 | |
| IL_6D9J_221 | 1/5/4347:4351, 1/5/4363:4365 | Other IL | geometric IL_5TBW_064 NA | |
| IL_6D9J_222 | 1/5/4400:4401, 1/5/4442:4444 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_6D9J_323 | 1/5/4400:4407, 1/5/4435:4444 | No text annotation | ||
| IL_6D9J_223 | 1/5/4401:4403, 1/5/4440:4442 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_6D9J_224 | 1/5/4403:4407, 1/5/4435:4440 | No text annotation | ||
| IL_6D9J_225 | 1/5/4412:4416, 1/5/4426:4430 | Triple sheared | homologous IL_5TBW_106 NA | |
| IL_6D9J_226 | 1/5/4453:4454, 1/5/4526:4528 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_6D9J_227 | 1/5/4456:4458, 1/5/4520:4524 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_6D9J_228 | 1/5/4458:4459, 1/5/4517:4520 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_6D9J_229 | 1/5/4466:4468, 1/5/4489:4491 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
| IL_6D9J_324 | 1/5/4466:4470, 1/5/4485:4491 | No text annotation | ||
| IL_6D9J_230 | 1/5/4468:4470, 1/5/4485:4489 | No text annotation | ||
| IL_6D9J_231 | 1/5/4495:4497, 1/5/4503:4505 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_6D9J_232 | 1/5/4537:4538, 1/5/4547:4549 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_6D9J_233 | 1/5/4575:4577, 1/5/4727:4728 | No text annotation | ||
| IL_6D9J_325 | 1/5/4575:4585, 1/5/4717:4728 | No text annotation | ||
| IL_6D9J_234 | 1/5/4577:4578, 1/5/4725:4727 | Single stack bend | geometric IL_5J7L_044 IL_26793.1 | |
| IL_6D9J_235 | 1/5/4579:4585, 1/5/4717:4724 | No text annotation | ||
| IL_6D9J_236 | 1/5/4590:4592, 1/5/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_6D9J_237 | 1/5/4596:4603, 1/5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_6D9J_238 | 1/5/4624:4629, 1/5/4669:4673 | No text annotation | ||
| IL_6D9J_239 | 1/5/4632:4637, 1/5/4662:4666 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_6D9J_326 | 1/5/4632:4640, 1/5/4659:4666 | No text annotation | ||
| IL_6D9J_240 | 1/5/4637:4640, 1/5/4659:4662 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_85033.2 | |
| IL_6D9J_241 | 1/5/4641:4642, 1/5/4655:4658 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_6D9J_352 | 1/5/4680:4685, 1/5/4705:4710 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
| IL_6D9J_328 | 1/5/4737:4743, 1/5/4957:4962 | No text annotation | ||
| IL_6D9J_243 | 1/5/4739:4743, 1/5/4957:4960 | No text annotation | ||
| IL_6D9J_353 | 1/5/4743:4746, 1/5/4954:4957 | Tandem non-canonical cWW pairs | geometric IL_8C3A_444 NA | |
| IL_6D9J_245 | 1/5/4756:4766, 1/5/4868:4877 | No text annotation | homologous IL_8P9A_352 IL_42231.1 | |
| IL_6D9J_246 | 1/5/4769:4773, 1/5/4862:4865 | No text annotation | ||
| IL_6D9J_247 | 1/5/4885:4888, 1/5/4931:4934 | Tandem non-canonical cWW pairs | geometric IL_4WF9_109 NA | |
| IL_6D9J_248 | 1/5/4890:4896, 1/5/4924:4929 | No text annotation | ||
| IL_6D9J_354 | 1/5/4890:4899, 1/5/4920:4929 | No text annotation | ||
| IL_6D9J_249 | 1/5/4896:4899, 1/5/4920:4924 | No text annotation | ||
| IL_6D9J_330 | 1/5/4970:4991, 1/5/5060:5063 | No text annotation | ||
| IL_6D9J_250 | 1/5/4972:4975, 1/5/4983:4986 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_6D9J_355 | 1/5/4992:4994, 1/5/5057:5059 | Isolated non-canonical cWW pair | geometric IL_8K85_006 IL_87907.2 | |
| IL_6D9J_252 | 1/5/4996:4997, 1/5/5053:5055 | Single bulged C | geometric IL_1KUQ_002 IL_61258.15 | |
| IL_6D9J_253 | 1/5/5000:5002, 1/5/5045:5050 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_6D9J_254 | 1/5/5003:5009, 1/5/5039:5044 | No text annotation | ||
| IL_6D9J_255 | 1/5/5012:5014, 1/5/5035:5036 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_6D9J_256 | 1/5/5014:5017, 1/5/5032:5035 | Double sheared | geometric IL_4V9F_100 IL_09705.15 | |
| IL_6D9J_257 | 1/7/15:16, 1/7/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6D9J_258 | 1/7/21:29, 1/7/48:57 | No text annotation | ||
| IL_6D9J_259 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_6D9J_260 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_6D9J_261 | 1/7/79:81, 1/7/95:97 | Isolated non-canonical cWW pair | geometric IL_1RPU_001 IL_87907.2 | |
| IL_6D9J_262 | 1/7/82:85, 1/7/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6D9J_263 | 1/8/64:66, 1/8/92:95 | Isolated non-canonical cWW with bulges | geometric IL_4V9F_097 IL_07785.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6D9J_265 | No text annotation | ||
| IL_6D9J_266 | No text annotation | ||
| IL_6D9J_267 | No text annotation | ||
| IL_6D9J_268 | No text annotation | ||
| IL_6D9J_270 | No text annotation | ||
| IL_6D9J_271 | Tandem non-canonical cWW pairs | ||
| IL_6D9J_272 | Isolated non-canonical cWW pair | ||
| IL_6D9J_273 | No text annotation | ||
| IL_6D9J_274 | Tandem non-canonical cWW pairs | ||
| IL_6D9J_045 | Tandem non-canonical cWW pairs | ||
| IL_6D9J_049 | Kink-turn | ||
| IL_6D9J_276 | No text annotation | ||
| IL_6D9J_279 | No text annotation | ||
| IL_6D9J_282 | No text annotation | ||
| IL_6D9J_283 | No text annotation | ||
| IL_6D9J_075 | No text annotation | ||
| IL_6D9J_285 | No text annotation | ||
| IL_6D9J_286 | No text annotation | ||
| IL_6D9J_288 | No text annotation | ||
| IL_6D9J_096 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_6D9J_291 | Partly complementary | ||
| IL_6D9J_292 | No text annotation | ||
| IL_6D9J_114 | Tandem non-canonical cWW pairs | ||
| IL_6D9J_293 | No text annotation | ||
| IL_6D9J_294 | No text annotation | ||
| IL_6D9J_295 | No text annotation | ||
| IL_6D9J_296 | Tandem non-canonical cWW pairs | ||
| IL_6D9J_119 | Isolated non-canonical cWW pair | ||
| IL_6D9J_121 | No text annotation | ||
| IL_6D9J_298 | Isolated non-canonical cWW pair | ||
| IL_6D9J_299 | No text annotation | ||
| IL_6D9J_300 | No text annotation | ||
| IL_6D9J_128 | No text annotation | ||
| IL_6D9J_148 | No text annotation | ||
| IL_6D9J_306 | No text annotation | ||
| IL_6D9J_157 | Major groove platform with extra pair | ||
| IL_6D9J_158 | No text annotation | ||
| IL_6D9J_162 | UAA/GAN with extra cWW | ||
| IL_6D9J_167 | Tandem non-canonical cWW pairs | ||
| IL_6D9J_309 | No text annotation | ||
| IL_6D9J_310 | Tandem non-canonical cWW pairs | ||
| IL_6D9J_311 | No text annotation | ||
| IL_6D9J_312 | No text annotation | ||
| IL_6D9J_185 | No text annotation | ||
| IL_6D9J_313 | No text annotation | ||
| IL_6D9J_314 | No text annotation | ||
| IL_6D9J_190 | No text annotation | ||
| IL_6D9J_316 | Tandem non-canonical cWW pairs | ||
| IL_6D9J_318 | No text annotation | ||
| IL_6D9J_214 | No text annotation | ||
| IL_6D9J_322 | Partly complementary | ||
| IL_6D9J_242 | No text annotation | ||
| IL_6D9J_327 | No text annotation | ||
| IL_6D9J_244 | No text annotation | ||
| IL_6D9J_329 | No text annotation | ||
| IL_6D9J_251 | Tandem non-canonical cWW pairs | ||
| IL_6D9J_356 | No text annotation | ||
| IL_6D9J_331 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6D9J_001 | 1/2/40:41, 1/2/481:487, 1/2/512:514 | No text annotation | homologous J3_8P9A_068 J3_67856.4 | |
| J3_6D9J_002 | 1/2/682:684, 1/2/918:922, 1/2/1022:1023 | No text annotation | geometric J3_4V88_080 NA | |
| J3_6D9J_045 | 1/2/682:684, 1/2/918:923, 1/2/1019:1023 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_6D9J_003 | 1/2/816:819, 1/2/829:831, 1/2/843:848 | No text annotation | homologous J3_8P9A_073 J3_97642.1 | |
| J3_6D9J_004 | 1/2/938:941, 1/2/985:993, 1/2/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
| J3_6D9J_005 | 1/2/1094:1096, 1/2/1136:1141, 1/2/1147:1151 | No text annotation | ||
| J3_6D9J_006 | 1/2/1218:1221, 1/2/1645:1651, 1/2/1673:1680 | No text annotation | homologous J3_4V88_035 NA | |
| J3_6D9J_007 | 1/2/1225:1228, 1/2/1530:1532, 1/2/1638:1641 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_6D9J_008 | 1/2/1237:1244, 1/2/1255:1266, 1/2/1516:1520 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_6D9J_029 | 1/2/1270:1277, 1/2/1320:1324, 1/2/1504:1512 | No text annotation | ||
| J3_6D9J_009 | 1/2/1340:1347, 1/2/1382:1389, 1/2/1481:1486 | No text annotation | ||
| J3_6D9J_010 | 1/2/1350:1351, 1/2/1360:1363, 1/2/1375:1379 | No text annotation | homologous J3_8P9A_081 J3_76043.3 | |
| J3_6D9J_030 | 1/2/1391:1395, 1/2/1450:1456, 1/2/1470:1479 | No text annotation | ||
| J3_6D9J_011 | 1/2/1532:1536, 1/2/1597:1604, 1/2/1635:1638 | No text annotation | homologous J3_4V88_041 NA | |
| J3_6D9J_012 | 1/5/112:116, 1/5/155:160, 1/5/275:278 | No text annotation | ||
| J3_6D9J_032 | 1/5/351:367, 1/5/374:379, 1/8/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_6D9J_013 | 1/5/380:387, 1/5/414:415, 1/8/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6D9J_033 | 1/5/380:390, 1/5/401:415, 1/8/19:20 | No text annotation | homologous J3_8P9A_047 J3_92134.2 | |
| J3_6D9J_046 | 1/5/451:455, 1/5/701:706, 1/5/1291:1296 | No text annotation | ||
| J3_6D9J_035 | 1/5/982:984, 1/5/1070:1076, 1/5/1234:1273 | No text annotation | ||
| J3_6D9J_014 | 1/5/1531:1537, 1/5/1622:1624, 1/5/1640:1643 | No text annotation | homologous J3_5TBW_004 NA | |
| J3_6D9J_037 | 1/5/1545:1548, 1/5/1580:1584, 1/5/1609:1614 | No text annotation | homologous J3_8P9A_050 J3_21998.1 | |
| J3_6D9J_016 | 1/5/1726:1727, 1/5/1802:1806, 1/5/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_09667.1 | |
| J3_6D9J_047 | 1/5/1968:1971, 1/5/1995:2001, 1/5/2016:2019 | No text annotation | ||
| J3_6D9J_018 | 1/5/2393:2399, 1/5/2805:2807, 1/5/2819:2822 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_6D9J_019 | 1/5/2402:2405, 1/5/2785:2791, 1/5/2800:2802 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_6D9J_038 | 1/5/2440:2445, 1/5/2515:2519, 1/5/2536:2537 | No text annotation | homologous J3_8P9A_055 J3_31965.2 | |
| J3_6D9J_048 | 1/5/2451:2456, 1/5/2465:2476, 1/5/2501:2508 | No text annotation | ||
| J3_6D9J_020 | 1/5/3935:3939, 1/5/4075:4078, 1/5/4168:4175 | No text annotation | ||
| J3_6D9J_049 | 1/5/3936:3941, 1/5/4072:4078, 1/5/4168:4174 | No text annotation | ||
| J3_6D9J_021 | 1/5/4091:4094, 1/5/4114:4129, 1/5/4155:4158 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_6D9J_041 | 1/5/4228:4231, 1/5/4330:4342, 1/5/4370:4375 | No text annotation | ||
| J3_6D9J_022 | 1/5/4241:4243, 1/5/4267:4269, 1/5/4278:4283 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_6D9J_050 | 1/5/4241:4245, 1/5/4263:4269, 1/5/4278:4283 | No text annotation | ||
| J3_6D9J_023 | 1/5/4463:4466, 1/5/4491:4493, 1/5/4507:4513 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_6D9J_043 | 1/5/4749:4754, 1/5/4879:4883, 1/5/4936:4951 | No text annotation | ||
| J3_6D9J_024 | 1/5/4970:4972, 1/5/4986:4991, 1/5/5060:5063 | No text annotation | ||
| J3_6D9J_044 | 1/7/9:14, 1/7/65:66, 1/7/109:110 | No text annotation | homologous J3_8C3A_059 NA | |
| J3_6D9J_051 | 1/8/44:45, 1/8/58:64, 1/8/95:99 | No text annotation | homologous J3_8CRE_027 J3_35667.2 | |
| J4_6D9J_001 | 1/2/671:673, 1/2/1032:1037, 1/2/1078:1089, 1/2/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
| J4_6D9J_014 | 1/5/111:112, 1/5/278:283, 1/5/304:310, 1/5/327:330 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_6D9J_003 | 1/5/196:199, 1/5/215:222, 1/5/226:228, 1/5/240:244 | No text annotation | ||
| J4_6D9J_015 | 1/5/712:714, 1/5/954:962, 1/5/970:980, 1/5/1275:1284 | No text annotation | ||
| J4_6D9J_005 | 1/5/2365:2371, 1/5/2389:2391, 1/5/2824:2829, 1/5/3856:3857 | No text annotation | ||
| J4_6D9J_006 | 1/5/2406:2410, 1/5/2434:2439, 1/5/2538:2539, 1/5/2777:2784 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_6D9J_016 | 1/5/2551:2555, 1/5/2572:2576, 1/5/2585:2593, 1/5/2752:2767 | No text annotation | ||
| J4_6D9J_017 | 1/5/2618:2619, 1/5/2637:2642, 1/5/2692:2698, 1/5/2718:2719 | No text annotation | ||
| J4_6D9J_009 | 1/5/2855:2863, 1/5/2887:2888, 1/5/3613:3626, 1/5/3835:3837 | No text annotation | ||
| J4_6D9J_010 | 1/5/3634:3638, 1/5/3650:3654, 1/5/3690:3694, 1/5/3821:3826 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_6D9J_011 | 1/5/3696:3698, 1/5/3752:3753, 1/5/3771:3794, 1/5/3806:3819 | No text annotation | ||
| J4_6D9J_012 | 1/5/4231:4237, 1/5/4287:4291, 1/5/4318:4319, 1/5/4328:4330 | No text annotation | ||
| J4_6D9J_013 | 1/5/4587:4590, 1/5/4620:4621, 1/5/4676:4678, 1/5/4712:4715 | No text annotation | ||
| J5_6D9J_001 | 1/2/30:34, 1/2/521:527, 1/2/558:563, 1/2/592:596, 1/2/640:644 | No text annotation | ||
| J5_6D9J_002 | 1/2/30:34, 1/2/521:527, 1/2/558:569, 1/2/581:596, 1/2/640:644 | No text annotation | ||
| J5_6D9J_003 | 1/2/123:129, 1/2/183:185, 1/2/214:219, 1/2/302:312, 1/2/337:341 | No text annotation | ||
| J5_6D9J_012 | 1/2/685:690, 1/2/736:744, 1/2/797:800, 1/2/865:874, 1/2/912:917 | No text annotation | ||
| J5_6D9J_007 | 1/3/7:11, 1/3/25:28, 1/3/44:46, 1/3/57:60, 1/3/76:77 | No text annotation | ||
| J5_6D9J_008 | 1/5/19:21, 1/8/35:42, 1/8/101:106, 1/8/113:114, 1/8/136:138 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_6D9J_013 | 1/5/1335:1340, 1/5/1516:1519, 1/5/1658:1661, 1/5/2288:2290, 1/5/2345:2351 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_6D9J_014 | 1/5/3903:3910, 1/5/4392:4400, 1/5/4444:4453, 1/5/4528:4534, 1/5/4552:4557 | No text annotation | ||
| J5_6D9J_015 | 1/5/3920:3923, 1/5/4188:4191, 1/5/4204:4206, 1/5/4226:4228, 1/5/4375:4381 | No text annotation | ||
| J6_6D9J_001 | 1/5/21:26, 1/5/57:67, 1/5/74:79, 1/5/104:109, 1/5/332:339, 1/8/33:35 | No text annotation | ||
| J6_6D9J_002 | 1/5/1352:1355, 1/5/1384:1388, 1/5/1395:1399, 1/5/1418:1421, 1/5/1464:1466, 1/5/1499:1504 | No text annotation | ||
| J7_6D9J_001 | 1/2/53:62, 1/2/86:106, 1/2/355:357, 1/2/405:409, 1/2/431:436, 1/2/457:461, 1/2/468:474 | No text annotation | ||
| J7_6D9J_003 | 1/5/1666:1673, 1/5/1682:1685, 1/5/1852:1855, 1/5/1879:1884, 1/5/1895:1899, 1/5/2077:2078, 1/5/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6D9J_027 | No text annotation | ||
| J3_6D9J_028 | No text annotation | ||
| J3_6D9J_031 | No text annotation | ||
| J3_6D9J_034 | No text annotation | ||
| J3_6D9J_036 | No text annotation | ||
| J3_6D9J_015 | No text annotation | ||
| J3_6D9J_017 | No text annotation | ||
| J3_6D9J_039 | No text annotation | ||
| J3_6D9J_040 | No text annotation | ||
| J3_6D9J_042 | No text annotation | ||
| J3_6D9J_025 | No text annotation | ||
| J3_6D9J_026 | No text annotation | ||
| J4_6D9J_002 | No text annotation | ||
| J4_6D9J_004 | No text annotation | ||
| J4_6D9J_007 | No text annotation | ||
| J4_6D9J_008 | No text annotation | ||
| J5_6D9J_004 | No text annotation | ||
| J5_6D9J_005 | No text annotation | ||
| J5_6D9J_006 | No text annotation | ||
| J5_6D9J_009 | No text annotation | ||
| J5_6D9J_010 | No text annotation | ||
| J5_6D9J_011 | No text annotation | ||
| J7_6D9J_002 | No text annotation |
Coloring options: