HL_6D9J_016

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGUUCAAAGC

Length

11 nucleotides

Bulged bases

6D9J|1|2|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|2|G|819
6D9J|1|2|U|820
6D9J|1|2|G|821
6D9J|1|2|U|822
6D9J|1|2|U|823
6D9J|1|2|C|824
6D9J|1|2|A|825
6D9J|1|2|A|826
6D9J|1|2|A|827
6D9J|1|2|G|828
6D9J|1|2|C|829

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain KK

uS4

Chain ZZ

eS24