HL_6D9J_020
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6D9J_020 not in the Motif Atlas
- Homologous match to HL_4V88_207
- Geometric discrepancy: 0.5038
- The information below is about HL_4V88_207
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
6D9J|1|2|C|994
6D9J|1|2|G|995
6D9J|1|2|A|996
6D9J|1|2|A|997
6D9J|1|2|A|998
6D9J|1|2|G|999
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain OO
- uS15
- Chain bb
- eS26
Coloring options: