HL_6D9J_030

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_030 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.41

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

6D9J|1|2|C|1460
6D9J|1|2|G|1461
6D9J|1|2|U|1462
6D9J|1|2|U|1463
6D9J|1|2|C|1464
6D9J|1|2|A|1465
6D9J|1|2|G|1466

Current chains

Chain 2

18S rRNA

Nearby chains

Chain BB

uS2

Chain SS

eS17

Chain dd

eS28

Chain hh

RACK1