HL_6D9J_040
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AAAUACAAUUUUGAGAGGUUAAUAAAUU
- Length
- 28 nucleotides
- Bulged bases
- 6D9J|1|4|A|6051, 6D9J|1|4|U|6059, 6D9J|1|4|U|6060, 6D9J|1|4|G|6064, 6D9J|1|4|A|6065, 6D9J|1|4|G|6066, 6D9J|1|4|G|6067, 6D9J|1|4|A|6073
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D9J|1|4|A|6050
6D9J|1|4|A|6051
6D9J|1|4|A|6052
6D9J|1|4|U|6053
6D9J|1|4|A|6054
6D9J|1|4|C|6055
6D9J|1|4|A|6056
6D9J|1|4|A|6057
6D9J|1|4|U|6058
6D9J|1|4|U|6059
6D9J|1|4|U|6060
6D9J|1|4|U|6061
6D9J|1|4|G|6062
6D9J|1|4|A|6063
6D9J|1|4|G|6064
6D9J|1|4|A|6065
6D9J|1|4|G|6066
6D9J|1|4|G|6067
6D9J|1|4|U|6068
6D9J|1|4|U|6069
6D9J|1|4|A|6070
6D9J|1|4|A|6071
6D9J|1|4|U|6072
6D9J|1|4|A|6073
6D9J|1|4|A|6074
6D9J|1|4|A|6075
6D9J|1|4|U|6076
6D9J|1|4|U|6077
Current chains
- Chain 4
- CrPV IRES
Nearby chains
- Chain K
- uL1
Coloring options: