HL_6D9J_048

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

6D9J|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_048 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.4976

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6D9J|1|5|U|204
6D9J|1|5|C|205
6D9J|1|5|U|206
6D9J|1|5|G|207
6D9J|1|5|A|208
6D9J|1|5|U|209
6D9J|1|5|C|210
6D9J|1|5|G|211

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Y

uL24

Chain e

eL32