HL_6D9J_052
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGGUAAACUCCA
- Length
- 12 nucleotides
- Bulged bases
- 6D9J|1|5|G|315
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6D9J_052 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3632
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6D9J|1|5|U|313
6D9J|1|5|G|314
6D9J|1|5|G|315
6D9J|1|5|U|316
6D9J|1|5|A|317
6D9J|1|5|A|318
6D9J|1|5|A|319
6D9J|1|5|C|320
6D9J|1|5|U|321
6D9J|1|5|C|322
6D9J|1|5|C|323
6D9J|1|5|A|324
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- eL13
- Chain N
- eL15
- Chain a
- uL15
- Chain i
- eL36
- Chain o
- eL42
Coloring options: