HL_6D9J_068

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

6D9J|1|5|C|1768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_068 not in the Motif Atlas

Geometric match to HL_5TBW_023

Geometric discrepancy: 0.2265

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6D9J|1|5|C|1763
6D9J|1|5|G|1764
6D9J|1|5|A|1765
6D9J|1|5|A|1766
6D9J|1|5|A|1767
6D9J|1|5|C|1768
6D9J|1|5|G|1769

Current chains

Chain 5

28S rRNA

Nearby chains