HL_6D9J_069

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

6D9J|1|5|G|1821

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_069 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3766

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6D9J|1|5|C|1816
6D9J|1|5|U|1817
6D9J|1|5|G|1818
6D9J|1|5|G|1819
6D9J|1|5|U|1820
6D9J|1|5|G|1821
6D9J|1|5|U|1822
6D9J|1|5|G|1823

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

uL18

Chain T

eL21

Chain b

eL29