HL_6D9J_070

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

6D9J|1|5|G|1869

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_070 not in the Motif Atlas

Homologous match to HL_5TBW_025

Geometric discrepancy: 0.5571

The information below is about HL_5TBW_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6D9J|1|5|G|1864
6D9J|1|5|G|1865
6D9J|1|5|U|1866
6D9J|1|5|A|1867
6D9J|1|5|A|1868
6D9J|1|5|G|1869
6D9J|1|5|C|1870

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

uL16

Chain b

eL29