HL_6D9J_076

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_076 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.4009

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6D9J|1|5|A|2376
6D9J|1|5|C|2377
6D9J|1|5|G|2378
6D9J|1|5|A|2379
6D9J|1|5|G|2380
6D9J|1|5|A|2381
6D9J|1|5|A|2382
6D9J|1|5|C|2383
6D9J|1|5|U|2384

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

eL19