HL_6D9J_085

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

6D9J|1|5|C|2709

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_085 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.2887

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6D9J|1|5|G|2705
6D9J|1|5|G|2706
6D9J|1|5|U|2707
6D9J|1|5|U|2708
6D9J|1|5|C|2709
6D9J|1|5|C|2710

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

eL19

Chain X

eL23