HL_6D9J_088
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGUAACUUCGGGAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 6D9J|1|5|U|2874, 6D9J|1|5|U|2880
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D9J|1|5|C|2867
6D9J|1|5|G|2868
6D9J|1|5|U|2869
6D9J|1|5|A|2870
6D9J|1|5|A|2871
6D9J|1|5|C|2872
6D9J|1|5|U|2873
6D9J|1|5|U|2874
6D9J|1|5|C|2875
6D9J|1|5|G|2876
6D9J|1|5|G|2877
6D9J|1|5|G|2878
6D9J|1|5|A|2879
6D9J|1|5|U|2880
6D9J|1|5|A|2881
6D9J|1|5|A|2882
6D9J|1|5|G|2883
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain n
- eL41
- Chain p
- eL43
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