HL_6D9J_092

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

6D9J|1|5|A|3726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_092 not in the Motif Atlas

Homologous match to HL_5TBW_048

Geometric discrepancy: 0.2978

The information below is about HL_5TBW_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6D9J|1|5|A|3724
6D9J|1|5|G|3725
6D9J|1|5|A|3726
6D9J|1|5|A|3727
6D9J|1|5|A|3728
6D9J|1|5|U|3729

Current chains

Chain 5

28S rRNA

Nearby chains

Chain K

uL1

Chain i

eL36

Chain o

eL42