HL_6D9J_098

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

6D9J|1|5|A|4255

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_098 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.3314

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6D9J|1|5|G|4250
6D9J|1|5|A|4251
6D9J|1|5|C|4252
6D9J|1|5|A|4253
6D9J|1|5|G|4254
6D9J|1|5|A|4255
6D9J|1|5|A|4256
6D9J|1|5|A|4257
6D9J|1|5|C|4258

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain J

uL11