HL_6D9J_104
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAGCAGAAUUC
- Length
- 12 nucleotides
- Bulged bases
- 6D9J|1|5|G|4475
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6D9J_104 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.2774
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05426.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6D9J|1|5|G|4472
6D9J|1|5|A|4473
6D9J|1|5|A|4474
6D9J|1|5|G|4475
6D9J|1|5|C|4476
6D9J|1|5|A|4477
6D9J|1|5|G|4478
6D9J|1|5|A|4479
6D9J|1|5|A|4480
6D9J|1|5|U|4481
6D9J|1|5|U|4482
6D9J|1|5|C|4483
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- eEF2
- Chain H
- uL6
- Chain m
- eL40
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