HL_6D9J_109

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6D9J|1|5|G|4694, 6D9J|1|5|C|4698

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_109 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.27

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6D9J|1|5|C|4688
6D9J|1|5|U|4689
6D9J|1|5|G|4690
6D9J|1|5|A|4691
6D9J|1|5|A|4692
6D9J|1|5|C|4693
6D9J|1|5|G|4694
6D9J|1|5|C|4695
6D9J|1|5|C|4696
6D9J|1|5|U|4697
6D9J|1|5|C|4698
6D9J|1|5|U|4699
6D9J|1|5|A|4700
6D9J|1|5|A|4701
6D9J|1|5|G|4702

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40