HL_6D9J_111

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

6D9J|1|5|A|4910, 6D9J|1|5|A|4911, 6D9J|1|5|G|4914

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6D9J_111 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1252

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6D9J|1|5|C|4906
6D9J|1|5|G|4907
6D9J|1|5|G|4908
6D9J|1|5|A|4909
6D9J|1|5|A|4910
6D9J|1|5|A|4911
6D9J|1|5|G|4912
6D9J|1|5|G|4913
6D9J|1|5|G|4914
6D9J|1|5|G|4915

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13