HL_6D9J_125

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAGUAUGGUUGCAAAGCUGAAAC

Length

24 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|2|G|1168
6D9J|1|2|G|1169
6D9J|1|2|A|1170
6D9J|1|2|G|1171
6D9J|1|2|U|1172
6D9J|1|2|A|1173
6D9J|1|2|U|1174
6D9J|1|2|G|1175
6D9J|1|2|G|1176
6D9J|1|2|U|1177
6D9J|1|2|U|1178
6D9J|1|2|G|1179
6D9J|1|2|C|1180
6D9J|1|2|A|1181
6D9J|1|2|A|1182
6D9J|1|2|A|1183
6D9J|1|2|G|1184
6D9J|1|2|C|1185
6D9J|1|2|U|1186
6D9J|1|2|G|1187
6D9J|1|2|A|1188
6D9J|1|2|A|1189
6D9J|1|2|A|1190
6D9J|1|2|C|1191

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain YY

uS12

Chain n

eL41

Chain p

eL43