HL_6D9J_126

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUUGAUAGCUC

Length

12 nucleotides

Bulged bases

6D9J|1|2|U|1300

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|2|G|1294
6D9J|1|2|A|1295
6D9J|1|2|U|1296
6D9J|1|2|U|1297
6D9J|1|2|G|1298
6D9J|1|2|A|1299
6D9J|1|2|U|1300
6D9J|1|2|A|1301
6D9J|1|2|G|1302
6D9J|1|2|C|1303
6D9J|1|2|U|1304
6D9J|1|2|C|1305

Current chains

Chain 2

18S rRNA

Nearby chains

Chain QQ

uS19

Chain ee

eS29

Chain gg

eS31