HL_6D9J_127

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGGUAAACUCCAU

Length

14 nucleotides

Bulged bases

6D9J|1|5|G|315, 6D9J|1|5|U|316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|G|312
6D9J|1|5|U|313
6D9J|1|5|G|314
6D9J|1|5|G|315
6D9J|1|5|U|316
6D9J|1|5|A|317
6D9J|1|5|A|318
6D9J|1|5|A|319
6D9J|1|5|C|320
6D9J|1|5|U|321
6D9J|1|5|C|322
6D9J|1|5|C|323
6D9J|1|5|A|324
6D9J|1|5|U|325

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

eL13

Chain N

eL15

Chain a

uL15

Chain i

eL36

Chain o

eL42