HL_6D9J_133

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGGACAGAAACCUC

Length

15 nucleotides

Bulged bases

6D9J|1|5|A|4255, 6D9J|1|5|A|4256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|5|G|4247
6D9J|1|5|A|4248
6D9J|1|5|G|4249
6D9J|1|5|G|4250
6D9J|1|5|A|4251
6D9J|1|5|C|4252
6D9J|1|5|A|4253
6D9J|1|5|G|4254
6D9J|1|5|A|4255
6D9J|1|5|A|4256
6D9J|1|5|A|4257
6D9J|1|5|C|4258
6D9J|1|5|C|4259
6D9J|1|5|U|4260
6D9J|1|5|C|4261

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain D

uL18

Chain J

uL11