HL_6D9J_136
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUCAGAUUAGGUAGUCGAA
- Length
- 19 nucleotides
- Bulged bases
- 6D9J|1|4|A|6187
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D9J|1|4|U|6179
6D9J|1|4|U|6180
6D9J|1|4|C|6181
6D9J|1|4|A|6182
6D9J|1|4|G|6183
6D9J|1|4|A|6184
6D9J|1|4|U|6185
6D9J|1|4|U|6186
6D9J|1|4|A|6187
6D9J|1|4|G|6188
6D9J|1|4|G|6189
6D9J|1|4|U|6190
6D9J|1|4|A|6191
6D9J|1|4|G|6192
6D9J|1|4|U|6193
6D9J|1|4|C|6194
6D9J|1|4|G|6195
6D9J|1|4|A|6196
6D9J|1|4|A|6197
Current chains
- Chain 4
- CrPV IRES
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3
- Transfer RNA; tRNA
- Chain PP
- uS11
- Chain RR
- uS9
Coloring options: