HL_6DDD_009

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

6DDD|1|1|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DDD_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1659

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

6DDD|1|1|C|348
6DDD|1|1|U|349
6DDD|1|1|G|350
6DDD|1|1|G|351
6DDD|1|1|A|352
6DDD|1|1|A|353
6DDD|1|1|A|354
6DDD|1|1|G|355

Current chains

Chain 1

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L24