HL_6DDD_011

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

6DDD|1|1|A|372, 6DDD|1|1|A|373, 6DDD|1|1|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DDD_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0948

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6DDD|1|1|G|370
6DDD|1|1|U|371
6DDD|1|1|A|372
6DDD|1|1|A|373
6DDD|1|1|U|374
6DDD|1|1|A|375
6DDD|1|1|A|376
6DDD|1|1|U|377
6DDD|1|1|C|378

Current chains

Chain 1

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L24

Chain S

50S ribosomal protein L4