HL_6DDD_012
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGCACGUGAAAUU
- Length
- 13 nucleotides
- Bulged bases
- 6DDD|1|1|G|432, 6DDD|1|1|A|435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6DDD_012 not in the Motif Atlas
- Homologous match to HL_4WF9_013
- Geometric discrepancy: 0.1936
- The information below is about HL_4WF9_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69139.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6DDD|1|1|A|427
6DDD|1|1|G|428
6DDD|1|1|C|429
6DDD|1|1|A|430
6DDD|1|1|C|431
6DDD|1|1|G|432
6DDD|1|1|U|433
6DDD|1|1|G|434
6DDD|1|1|A|435
6DDD|1|1|A|436
6DDD|1|1|A|437
6DDD|1|1|U|438
6DDD|1|1|U|439
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain J
- 50S ribosomal protein L28
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