HL_6DDD_018

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUAAAU

Length

7 nucleotides

Bulged bases

6DDD|1|1|A|658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DDD_018 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.1961

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

6DDD|1|1|A|655
6DDD|1|1|G|656
6DDD|1|1|U|657
6DDD|1|1|A|658
6DDD|1|1|A|659
6DDD|1|1|A|660
6DDD|1|1|U|661

Current chains

Chain 1

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L4