HL_6DDD_058

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAGUCG

Length

8 nucleotides

Bulged bases

6DDD|1|1|G|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6DDD_058 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1123

The information below is about HL_5J7L_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

6DDD|1|1|U|2555
6DDD|1|1|G|2556
6DDD|1|1|U|2557
6DDD|1|1|A|2558
6DDD|1|1|G|2559
6DDD|1|1|U|2560
6DDD|1|1|C|2561
6DDD|1|1|G|2562

Current chains

Chain 1

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L36